Ajap014696.1
Basic Information
- Insect
- Asobara japonica
- Gene Symbol
- cheC
- Assembly
- GCA_017141405.1
- Location
- JADHZF010000080.1:49873-51783[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.1e-07 6.1e-05 23.4 0.0 3 38 17 52 15 56 0.90 2 2 3.8 2.2e+03 -0.8 0.0 23 30 92 99 92 100 0.91
Sequence Information
- Coding Sequence
- ATGTCATCAAAACGAAAAAGAATGACGAATCGTCAAGATTGGCACCCACAAACAATGGCGTATGCTGTTGATGTTTATGGTAATCACGATATGCCATTACGCACAGCAGCAAAGACATATTCGATCCCCAGATCAACACTTAGACGTAGAGTGAAACTATATCGACAATACCCAGATCTAGAGATGATCTCTCAAAAAGAAATGGGCCGTCGCCAAACAGTTTTTGGGCTCCTTCAAGAAAAAGAACTGGTGAAATACATATTGGAGTTGGAGGCAAGACTTCATGGGGTACCAAGAGAAGAATTTTGCATAATCGCGTGGCAACTAGCAGTTCTCATTCATCTACTTCGAGACGGTAAGGCCGGAAGGGGCTGGATGCGAAGATTCCTGGAAAGAAATCCTACGGTATCACTGCGAAATCCGGAGTCAGTGCCGATGTATCGGGCGTCCGCTTTCAGCAGGATTGTCGTCGGTAACTTTTTTGATTTAGTCGAGGAGCAAATGAGCTTACCGGGAGATTTCGTTGCAGGTACTCGAGTCCTGCTTAACAGAATTTTTAATGCAGACAAGACAGCAATTAGTGTAAATCCAAAAACACACGAGAAGATTCTGAATAAAAAAGGCAGACGGCAAGTTGGCAAAGTAGTATCAAGTGATAGAGGTCAACACATTACTGCTAAACTATATGTGTCTGCAGCAGGTGAGGCGTTACCAATACTGTTGATTTTCTCTCGTAAGCCAATGAAGGATAGTTTACTCGAAGGAGCTTCAGAAGGAATAGTCCCCTTAAATCGTGACGTTTGCTCGGACGAAGATTATGCTTCTGCCGAAGTCACAAATCGACTTCCACCAACCTCACCTACTCCGCAACCGGAATCTGACCAGGCTGTCGATCGTGTAATCGAATACTTTCACAATCGCCTAGTACACTGCTTATGA
- Protein Sequence
- MSSKRKRMTNRQDWHPQTMAYAVDVYGNHDMPLRTAAKTYSIPRSTLRRRVKLYRQYPDLEMISQKEMGRRQTVFGLLQEKELVKYILELEARLHGVPREEFCIIAWQLAVLIHLLRDGKAGRGWMRRFLERNPTVSLRNPESVPMYRASAFSRIVVGNFFDLVEEQMSLPGDFVAGTRVLLNRIFNADKTAISVNPKTHEKILNKKGRRQVGKVVSSDRGQHITAKLYVSAAGEALPILLIFSRKPMKDSLLEGASEGIVPLNRDVCSDEDYASAEVTNRLPPTSPTPQPESDQAVDRVIEYFHNRLVHCL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -