Basic Information

Transcription Factor Domain

TF Family: zf-NF-X1
Domain: zf-NF-X1 domain
PFAM: PF01422
TF Group: Zinc-Coordinating Group
Description: This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 1.5 7.2e+03 -3.1 0.6 15 18 45 48 44 49 0.68

2 7 0.61 3e+03 -1.9 3.0 6 10 75 79 71 79 0.61

3 7 0.059 2.9e+02 1.3 0.3 4 10 105 111 104 111 0.95

4 7 2.2e-06 0.011 15.5 13.2 4 18 120 134 118 135 0.93

5 7 1.8 9e+03 -3.4 0.8 6 10 161 165 161 166 0.83

6 7 2e-08 9.7e-05 22.0 8.9 1 18 171 188 171 189 0.97

7 7 1.8e-05 0.089 12.6 5.8 7 19 193 205 193 205 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	1.5	7.2e+03	-3.1	0.6	15	18	45	48	44	49	0.68
2	7	0.61	3e+03	-1.9	3.0	6	10	75	79	71	79	0.61
3	7	0.059	2.9e+02	1.3	0.3	4	10	105	111	104	111	0.95
4	7	2.2e-06	0.011	15.5	13.2	4	18	120	134	118	135	0.93
5	7	1.8	9e+03	-3.4	0.8	6	10	161	165	161	166	0.83
6	7	2e-08	9.7e-05	22.0	8.9	1	18	171	188	171	189	0.97
7	7	1.8e-05	0.089	12.6	5.8	7	19	193	205	193	205	0.94

Coding Sequence: ATGAAAAACGTTAGCCAGAGTGATGTGGATGCCGCCTCGCAGCGCGAGCGCCTGGAGCAGATGCTGTCCCGCCGCATGCTGGAATGCTTGGTCTGTTGCGAAAAAATCAAGCACACAGACAAAATCTGGTCCTGCGAACAGTGCTACCACATCCTCCACCTAAATTGCACCATAGCCTGGGCAAATTCGTCGAAACTAGAAAACGGCTGGCGTTGTCCCGCCTGTCAGAACGTTTGCAGCGAGATCCCCAAACAGTACAACTGTTACTGCGGTAAAACACAAGAACCTCGCCCCCTTCCCGGTGTCATTCCCCACGCCTGCGGCGAGCTGTGCATGAGGAAGGGTCGCACTTGCGACCACAAATGCACCATCCTTTGCCACCCCGGTCCGTGCCCTGATTGCAACGTGATGGTGGCAAAGCCTTGTGGCTGTGGCGCCACCAAGCAAACTGTTAAATGCAGTTCAGACATGGACATCATCTGTAATTCCAAATGCAAGAAGCCGTTGGACTGCGGTTTGCACTTCTGCGAATTGCGATGCCATTCTGGGCCATGTAATTCTTGCGATAAGACCATCCAGCAAATTTGTCACGAAGGCGGCTGTGAGCCATGCAAGAGAGATGTGGAGTTGATTAAGACGTGTCCGTGTGGGAAGACGCGACTGCAGCAGATGAGGAGCACTTGTCTCGATCCTATACCTTGCTGTGATAAGCTTCTTTTCAAGTGCGGTTTCTTCACTAATGATTAG
Protein Sequence: MKNVSQSDVDAASQRERLEQMLSRRMLECLVCCEKIKHTDKIWSCEQCYHILHLNCTIAWANSSKLENGWRCPACQNVCSEIPKQYNCYCGKTQEPRPLPGVIPHACGELCMRKGRTCDHKCTILCHPGPCPDCNVMVAKPCGCGATKQTVKCSSDMDIICNSKCKKPLDCGLHFCELRCHSGPCNSCDKTIQQICHEGGCEPCKRDVELIKTCPCGKTRLQQMRSTCLDPIPCCDKLLFKCGFFTND

Sequence clustering based on sequence similarity using MMseqs2