Basic Information

Transcription Factor Domain

TF Family: zf-NF-X1
Domain: zf-NF-X1 domain
PFAM: PF01422
TF Group: Zinc-Coordinating Group
Description: This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.42 2e+03 -1.4 7.1 14 19 142 147 141 147 0.94

2 8 9.2e-07 0.0045 16.7 13.5 1 19 183 201 173 201 0.86

3 8 0.33 1.6e+03 -1.0 0.9 5 10 225 230 225 230 0.94

4 8 6.8e-09 3.4e-05 23.5 10.8 1 19 236 254 236 254 0.99

5 8 1.9 9.2e+03 -3.4 0.7 5 10 278 283 278 283 0.84

6 8 1.9e-07 0.00092 18.9 10.5 1 18 289 306 289 307 0.97

7 8 0.6 3e+03 -1.9 0.2 1 4 316 319 316 320 0.87

8 8 0.72 3.5e+03 -2.1 1.5 1 8 341 348 341 349 0.78

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.42	2e+03	-1.4	7.1	14	19	142	147	141	147	0.94
2	8	9.2e-07	0.0045	16.7	13.5	1	19	183	201	173	201	0.86
3	8	0.33	1.6e+03	-1.0	0.9	5	10	225	230	225	230	0.94
4	8	6.8e-09	3.4e-05	23.5	10.8	1	19	236	254	236	254	0.99
5	8	1.9	9.2e+03	-3.4	0.7	5	10	278	283	278	283	0.84
6	8	1.9e-07	0.00092	18.9	10.5	1	18	289	306	289	307	0.97
7	8	0.6	3e+03	-1.9	0.2	1	4	316	319	316	320	0.87
8	8	0.72	3.5e+03	-2.1	1.5	1	8	341	348	341	349	0.78

Coding Sequence: atgaataataaaaagacaGACTCTAATCCATGGTCCAAAAATCAGCAGATCAagaatcgaaaaaataatgataatgtttttcgaaattcaCCTGCACCATCTGagatgaaatttaatgaagcACATGGAAAATTACAAGCCGCTGTTCAAAAGCATGTTAAAGATTATGAATCTTCTTCAGATGAAGAGGAGTTGGAATCAGAAGATATCATAGatggaattttaaaaaattatactgaaACTGGGGGAAAAGGTGAATGTTTAGGACGTACAAGAACCTTTTTGCAAGATTCAATTTTGTCTGGAACAGTTACATGTTTAATTTGTATCTCACGAGTGAGACGAGATTCAGCTATATGGAGTTGTTTTGAATGCTATTGTGTCTTTCATCTCAGTTGTATCCAAAGATGGTCCAAAGATAGTCCTTGTCCACCATGTCCAGTGACAGTTAGTGTTAGTTGTTACTGTGGTTCTCAGCAACCTAAAACACAAAGATGTAACAATAAGGAATGGTCTTGTGGTAATCGGTGTGGCAAACTACTAGCATGTCAGAAACATACCTGTTCTGATCCTTGCCATTTTGGAGATTGCCATCCTTGTTCCAAAAAAAGTTTGCAgaaatgtttatgtaaaaataatcaaaaacttcGTGATTGTGCGACTCCCACATGGAAATGTGATAAGGTGTGTAATAAACTACTTGAATGTGGAAATCATACTTGCTTAGTTGTATGTCATGAAGAGGACTGTGATCCATGCCCTTTGACTCAATTGAGAACTTGTCCATGTGGTAAAAGTAAATATCAGTTATCTTGTACTGAAGAGACCCCTACATGTTTAGATACttgtgataaaatattaaaatgtggcATTCATAAATGTAACCAACGTTGTCATAAGGAAGCCTGTGGAGTGTGCCTTGAAACTGTAGAAAAATCTTGTAAATGCGGACTACATTCCAAGGAAGTGCATTGTTATAAAccatatttttgtgaaactaaATGCAAGCGAATGAAAGACTGCAATAAACATCCTTGTAATAAAAAG
Protein Sequence: MNNKKTDSNPWSKNQQIKNRKNNDNVFRNSPAPSEMKFNEAHGKLQAAVQKHVKDYESSSDEEELESEDIIDGILKNYTETGGKGECLGRTRTFLQDSILSGTVTCLICISRVRRDSAIWSCFECYCVFHLSCIQRWSKDSPCPPCPVTVSVSCYCGSQQPKTQRCNNKEWSCGNRCGKLLACQKHTCSDPCHFGDCHPCSKKSLQKCLCKNNQKLRDCATPTWKCDKVCNKLLECGNHTCLVVCHEEDCDPCPLTQLRTCPCGKSKYQLSCTEETPTCLDTCDKILKCGIHKCNQRCHKEACGVCLETVEKSCKCGLHSKEVHCYKPYFCETKCKRMKDCNKHPCNKK

Sequence clustering based on sequence similarity using MMseqs2