Basic Information

Insect: Asbolus verrucosus
Gene Symbol: -
Assembly: GCA_004193795.1
Location: QDEB01033909.1:870-4277[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.85 43 4.6 4.2 1 23 11 33 11 33 0.97

2 15 0.59 30 5.1 0.5 1 23 52 75 52 75 0.96

3 15 0.00069 0.035 14.3 2.7 1 23 122 145 122 145 0.94

4 15 0.46 23 5.4 2.8 1 23 154 177 154 177 0.93

5 15 0.00081 0.041 14.1 4.7 1 23 186 208 186 208 0.98

6 15 0.011 0.57 10.5 7.9 1 23 217 240 217 240 0.96

7 15 5.6 2.8e+02 2.0 1.2 1 10 249 258 249 261 0.84

8 15 0.0015 0.076 13.2 2.8 1 23 266 289 266 289 0.96

9 15 0.0089 0.45 10.8 4.0 1 23 298 321 298 321 0.96

10 15 3.6 1.8e+02 2.6 3.6 1 23 330 353 330 353 0.93

11 15 0.0051 0.26 11.6 5.8 1 23 362 385 362 385 0.98

12 15 0.036 1.8 8.9 4.9 1 23 410 432 410 432 0.98

13 15 1.4 70 3.9 0.4 1 23 451 474 451 474 0.93

14 15 3.2 1.6e+02 2.8 2.6 1 21 490 510 490 514 0.88

15 15 0.0018 0.09 13.0 1.3 2 23 520 542 519 542 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.85	43	4.6	4.2	1	23	11	33	11	33	0.97
2	15	0.59	30	5.1	0.5	1	23	52	75	52	75	0.96
3	15	0.00069	0.035	14.3	2.7	1	23	122	145	122	145	0.94
4	15	0.46	23	5.4	2.8	1	23	154	177	154	177	0.93
5	15	0.00081	0.041	14.1	4.7	1	23	186	208	186	208	0.98
6	15	0.011	0.57	10.5	7.9	1	23	217	240	217	240	0.96
7	15	5.6	2.8e+02	2.0	1.2	1	10	249	258	249	261	0.84
8	15	0.0015	0.076	13.2	2.8	1	23	266	289	266	289	0.96
9	15	0.0089	0.45	10.8	4.0	1	23	298	321	298	321	0.96
10	15	3.6	1.8e+02	2.6	3.6	1	23	330	353	330	353	0.93
11	15	0.0051	0.26	11.6	5.8	1	23	362	385	362	385	0.98
12	15	0.036	1.8	8.9	4.9	1	23	410	432	410	432	0.98
13	15	1.4	70	3.9	0.4	1	23	451	474	451	474	0.93
14	15	3.2	1.6e+02	2.8	2.6	1	21	490	510	490	514	0.88
15	15	0.0018	0.09	13.0	1.3	2	23	520	542	519	542	0.94

Sequence Information

Coding Sequence: atggaaTTCACTGATGATTGgagaaattttcacaaatgtaAGCTGTGCCCTTATCGATCTCGATCTATTCACAAAATACTAAATCACGTCCGTTTACATCGTACACGGaaaaaagaagatttattTGTCTGTAACTTGGACTCTCCTCAACGTTATCAATGTGACAGTTGTGAAGTTGTAACACATTTCAAAGTATTGCTGGATAACCACACCAACATTGTGCATAAGAAATTAGAAGTTAATGACGATTTGAGACACGTATTGAAGAGTTACGAGTGTGAACAATGCGAATTTCAAACGAATTCTGTGATGGTGTTGCTTAAACATTTCTGTAATACGACACATGattgtttaaagaaatgttttaaatgtgaatattgtcAGTATAGAACACAAAGGGAGAATAATCTGAAACGTCACATTATATTTAGACATACGAATTCAGAAGCCATAAAACGGTTCCAATGTGAAGACTGTTCTTATAGAACAcaatggaaaattcatttgaaaaaccaCATAACGcagaaacatacaaatcccaaagatataaaatggtttcaatgtgagcaTTGTTCATACAAATCAAAGCTTAAAGCATATCTGAGACGTCACATGCTAAAGCATATAAATCCTGAAGATAtaaagtggtttaaatgtgaacattgttcttgtaaaacaaaatttaaatctagttTGAGAAACCACATGGTatcgaaacatacaaatcccgaagatgtaaagtggtttcaatgtgaacattgttcttataaaacaaaattgaaagttgtaaaatggtttaaatgtgaatattgcTCTTATAAAACACAATCGAGAagtgaattgaaaaatcataCGATATCGAAACATACGAACCCCAAAGATGTAGattggtttcaatgtgaacattgttcttatgaaacaaaattgaagcgtaatttgaaaaatcacgtAACATCGAGACACACAAAtcccgaagatgtaaaatggtttaaatgtgaatattgctgttataaagtaaaatggagaactgaattgaaaaatcatatGATATTGAAACATACGGATCTCGAAGATGtgaaatggtttcaatgtgaacattgttcttataaagcaaaattgaaacgtaatttgaaaaagcatACAAGATCGAAACATGAAAATTCTGCAAATGATTTTGTTGAAAGtgtcacaataaaaatggaatgCAGTGATGATTGGAGGAAATTTCACAAGTGCAAACTGTGCTTTTATCGAACACGATCTATTCGCAATTTATTCAACCATGTTCGTTTACATCGTACACGAGAGAAAGACGATTTATTTGTCTGCAGCTTGAACTCGCCTCAAAGTTATCAATGTGACAGTTGTGAAGTCGTAACACATTTCAAAGCATTGCTAGATAATCACAACAACATTGTGCACAAGGAATTTGGAGTTAATGAAGATTTGAGACCCGTATTAAAGAGTTACGAGTGTGGAGAGTGCGATTTTCAAACGTGTTCTGCGATGGTGTTGctcaaacatttttgcaacatGGAACATCAaggtttaaaattgaaatgtgacTATTGTTCTTATagaggaaaaatgaaaagtcaattgaaaaatcacattctgttgaaacatacaaatcccaaaaatCTAAACACACCAGTtccgaagatgtaa
Protein Sequence: MEFTDDWRNFHKCKLCPYRSRSIHKILNHVRLHRTRKKEDLFVCNLDSPQRYQCDSCEVVTHFKVLLDNHTNIVHKKLEVNDDLRHVLKSYECEQCEFQTNSVMVLLKHFCNTTHDCLKKCFKCEYCQYRTQRENNLKRHIIFRHTNSEAIKRFQCEDCSYRTQWKIHLKNHITQKHTNPKDIKWFQCEHCSYKSKLKAYLRRHMLKHINPEDIKWFKCEHCSCKTKFKSSLRNHMVSKHTNPEDVKWFQCEHCSYKTKLKVVKWFKCEYCSYKTQSRSELKNHTISKHTNPKDVDWFQCEHCSYETKLKRNLKNHVTSRHTNPEDVKWFKCEYCCYKVKWRTELKNHMILKHTDLEDVKWFQCEHCSYKAKLKRNLKKHTRSKHENSANDFVESVTIKMECSDDWRKFHKCKLCFYRTRSIRNLFNHVRLHRTREKDDLFVCSLNSPQSYQCDSCEVVTHFKALLDNHNNIVHKEFGVNEDLRPVLKSYECGECDFQTCSAMVLLKHFCNMEHQGLKLKCDYCSYRGKMKSQLKNHILLKHTNPKNLNTPVPKM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -