Aver014087.1
Basic Information
- Insect
- Asbolus verrucosus
- Gene Symbol
- -
- Assembly
- GCA_004193795.1
- Location
- QDEB01129445.1:6973-8444[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 4.6 2.3e+02 2.3 1.4 3 23 107 129 105 129 0.83 2 11 0.00067 0.034 14.3 2.3 3 23 136 157 135 157 0.94 3 11 0.00014 0.0072 16.5 2.4 1 23 165 188 165 188 0.94 4 11 0.0047 0.24 11.7 2.5 1 19 204 222 204 225 0.95 5 11 0.0067 0.34 11.2 0.4 2 23 228 248 227 248 0.96 6 11 0.041 2.1 8.7 0.2 3 23 255 276 253 276 0.92 7 11 9.9e-05 0.005 17.0 1.8 1 23 281 303 281 303 0.98 8 11 0.00087 0.044 14.0 1.7 1 23 309 332 309 332 0.96 9 11 8.8e-07 4.5e-05 23.4 3.0 1 23 338 360 338 360 0.97 10 11 1.8e-05 0.0009 19.3 0.5 1 23 366 389 366 389 0.98 11 11 0.00092 0.047 13.9 0.2 2 23 398 419 397 419 0.95
Sequence Information
- Coding Sequence
- ATGAGTAAGAGGATTTGTAGGTTATGTTTAGCCTACCCTTCGGTTTGTTTTTCCTTATTGGAAAAGAACATTTCTGAAATGTTAGAAGCTTTAACTTCAATAAAGGTGAACCCAAATGATGTGATGTCAACAATCACTTGCATGAAATgcttattaaatatgaaacttGCTTTCAACATTCAACAGAATATTCTAAAAGCGGACGAGAAATTGAAAGAAGTGtctcttttaaataatgtggAAGTTAAATTAGAAGTTTCCGATTTGGAATTAAATCATGAGACTGCAGcagaacttttatttaaaaTGAAGTTGTGTTGTTCAAGTTGCATAATCTGTGGTGCTAATGTAGACAGAAATCTATTAACCAAACATGTTCAAGAACATCTTAGTGATAAACAAGCTTGTGATTTTTGTAGTAAATCATTTAGTAACATTGAAGAATATAAAAGGCATATTTCACATAAACACAAACATTGCCGACATGTGAATCACAAATGTGAGCAGTGTGGTGCCACTTTTCgttataaaagtttatataaaattcataCAAGTCAAGCTCATATAAAATGTGATgataagaAGCTAAAAGAATTGGATAGAGGACCATTTACTTGTGATATATGtcagaaacaatttcaattcaaGAAACAGTTAATGAGTCATTCACACCAAAAAAAGAAGTGTCCAATTTGTGATGCAGAAATCACAAAAACTAATCTGAAAAAACATGTAATGAACCATTCATCAGGACCTCAAATCTGTGAACTATGTGGTGCCAGTTTGCGAAGTTTAGAAAGTTTAAGAGGGCATCTTGCTCATACACACAGTACAGTGATATACAATTGTGAAGAATGTGGGAAAGTGTTTCGAAAGCGTTATCCCTATTTGTTACACAAAAAGAAACATGCTGGTGAAAAAGCGCATATTTGTGAAAGCTGTGGTAAAGCttttctcacatttttttatttaaataaacacattaagACTGCTCATCTGAAACTGCGGCCGTTTATTTGTGAATATTGCCacaaagcgttttcaagtaAATTTGCCTTAAGGACTCACATAAGACAGCATACTAATGAAACACCCTACAAATGTGAAATATGTGGAGATGGTTTTAgacaaaatgtttcattaagaGCGCACAGGAAGTcaaaacataatattattgAACCCAAAACTTGTGCTTGCCCAGTCTGTGGTAAACAGTTTGGTTCAGATCAAGCGATAATTAGTCATATGAGGCTACATTGA
- Protein Sequence
- MSKRICRLCLAYPSVCFSLLEKNISEMLEALTSIKVNPNDVMSTITCMKCLLNMKLAFNIQQNILKADEKLKEVSLLNNVEVKLEVSDLELNHETAAELLFKMKLCCSSCIICGANVDRNLLTKHVQEHLSDKQACDFCSKSFSNIEEYKRHISHKHKHCRHVNHKCEQCGATFRYKSLYKIHTSQAHIKCDDKKLKELDRGPFTCDICQKQFQFKKQLMSHSHQKKKCPICDAEITKTNLKKHVMNHSSGPQICELCGASLRSLESLRGHLAHTHSTVIYNCEECGKVFRKRYPYLLHKKKHAGEKAHICESCGKAFLTFFYLNKHIKTAHLKLRPFICEYCHKAFSSKFALRTHIRQHTNETPYKCEICGDGFRQNVSLRAHRKSKHNIIEPKTCACPVCGKQFGSDQAIISHMRLH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -