Basic Information

Insect: Asbolus verrucosus
Gene Symbol: prdm10
Assembly: GCA_004193795.1
Location: QDEB01069680.1:6485-9471[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.00074 0.038 14.2 1.4 1 23 188 210 188 210 0.98

2 10 0.0028 0.14 12.4 5.0 1 21 214 234 214 235 0.95

3 10 1.8e-05 0.00093 19.3 2.6 1 23 240 263 240 263 0.92

4 10 0.082 4.1 7.8 2.3 1 19 267 285 267 288 0.93

5 10 2.7e-05 0.0014 18.7 1.4 1 23 298 320 298 320 0.96

6 10 0.037 1.9 8.8 0.3 2 23 333 354 332 354 0.96

7 10 1.2e-06 6.2e-05 23.0 1.3 1 23 359 381 359 381 0.97

8 10 0.00025 0.013 15.7 2.2 2 23 388 409 387 409 0.97

9 10 9.8e-07 5e-05 23.3 1.3 1 23 415 438 415 438 0.95

10 10 0.00011 0.0054 16.9 0.3 1 23 451 474 451 474 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.00074	0.038	14.2	1.4	1	23	188	210	188	210	0.98
2	10	0.0028	0.14	12.4	5.0	1	21	214	234	214	235	0.95
3	10	1.8e-05	0.00093	19.3	2.6	1	23	240	263	240	263	0.92
4	10	0.082	4.1	7.8	2.3	1	19	267	285	267	288	0.93
5	10	2.7e-05	0.0014	18.7	1.4	1	23	298	320	298	320	0.96
6	10	0.037	1.9	8.8	0.3	2	23	333	354	332	354	0.96
7	10	1.2e-06	6.2e-05	23.0	1.3	1	23	359	381	359	381	0.97
8	10	0.00025	0.013	15.7	2.2	2	23	388	409	387	409	0.97
9	10	9.8e-07	5e-05	23.3	1.3	1	23	415	438	415	438	0.95
10	10	0.00011	0.0054	16.9	0.3	1	23	451	474	451	474	0.97

Sequence Information

Coding Sequence: CTACAAATTCTAACTGATGGCTCATATTCTGTGGTGACAAAGTCCCCCATTTGTAAAGGCACCCAATTCGGCCCCTTTCAAGCGGGAAAAGTACAAACCTTAGACCCCACGGTCGcttttcctttaaaaatattttcattcgaTGGCAATTCCGAGTATTATTTGGATATTAGTGATGAAAATAAGTGCAGCTGGTTGATCTTCGTTAGCCCTGCTGACCACTTGGAGGAACAAAATCTGGTCTGTTACCAGAGCTTGAAAAGTCACCTAAAGATCGTGCACAAGTCCAGTTTTGCAACATCACAGCCGAAACCGACGAAGAACTGCGAGTCCACTTCGAAAGTCCTCTGTAAGGATGTGGCCCTCGGAGGTCCGCTGCTGAACGACATGTTTACGGATAGCTCCGATTTGCAACAAGCCGACCTTAACCAGTTCGAGCTCAATATAGACAATCAAAATCTGTTACTCGACGCCGACAATTTGATCGAGGAGAATCTGCTTAATGAAAACGTGAAGGATTTGGATCATTTCAATTTCGAAATCGACGACAGTCAGAAGCAGTTCGTTTGCGATATTTGCCTCAAACAGTTCACGAAAGTCAAATTATTGATCATACATCTGAGACATCACACGGGCGACTTCGTGTGCTTCAAGTGTTTGAAGatattttgtcGCAGGGAGAACTTGAAGTCGCACATTTGCAACGTGAATTCTCGCCACAGTTGCAGTTTGTGCGACAAAAGCTTCACCCAACGGAAGTATCTCTCGCGACACCTCGAAGCCATGCACAACAAGAAATTCAGTTGCGTCAGCTGCAATAAGTcctattattcaaataaagaGTTATTAGAACACAATTGTAGTAAAATCCCTCTGgttgaaaaggaaaaattctTGTGTCCCATTTGCGACAAGCTGTTTTACCGCGATACTTACTTAAGAAAGCATCTTAAGACGCACGTGCAGAGGTcgaaaactgtcaaatttccCGGTGTGGTTTGCGAGGTGTGTGGGCTAAGCTTAGAAACGAAAAATTCCTACTATCTCCACAAGAAAAACCACGAAGAACCGGCCTATTCCTGCGAAATctgcaaaaagaaattttaccgTCAAGACAGCTTAAAGCAGCATATTTTGGGCCACCAGAAAACACCCGAGATCGAATGTAATGTTTGTAAGAAGaagtttaaaactaaaaaaatactcaTGTCTCATATGAAATACCACAACAACGACAAACTCCACAAATGCCCTCTTTGCGACGCCAGTTTCAAACAACGGGCCAACTTGAACAGGCATTTGAAAGGCAGCCATAAAGAGAATAAGAGCAAATGTGTCGTCATCGAATATTACAACTGTCCCATTTGCGCAAAATCGATCAAGTTGAGGAGTTCGCTGCTGAGGCACTTGAGAAAAGTCCATTCGGACATCAGCAACGTCGACTTGAGTTGCCTCAAACCGAAATTGTTTACGAATTCCGGTCACAGCAGAGTCAACGAGAAtaacaatgaagaaaaagCTGCACCCAGTGATAATTTATGTGATAATTTAATGTCGAATAGTCTCGAATTCGACGATCAAATCAATAATCTGCTGAACAGTGCCGAAAATAACTCAGCAATACACAAACAGGCCGTCGATAATTTGGTGAAGGAGCTGGATTTGGGTACCAAAAAAGAACTGAAGCAGCAGCGCGAGGTCTGCTTGTCCATCCCAGACTTGACCGAAGCCGACCAAGAGATTACTTTAGACAAGAACGCGTACATTTTGGAGAATGGTACCATCGTTCAACCCCAGGGGGATTCCGACAATGTCATCATTTATGTTCTGGACCAAGCCTACTCGTGA
Protein Sequence: LQILTDGSYSVVTKSPICKGTQFGPFQAGKVQTLDPTVAFPLKIFSFDGNSEYYLDISDENKCSWLIFVSPADHLEEQNLVCYQSLKSHLKIVHKSSFATSQPKPTKNCESTSKVLCKDVALGGPLLNDMFTDSSDLQQADLNQFELNIDNQNLLLDADNLIEENLLNENVKDLDHFNFEIDDSQKQFVCDICLKQFTKVKLLIIHLRHHTGDFVCFKCLKIFCRRENLKSHICNVNSRHSCSLCDKSFTQRKYLSRHLEAMHNKKFSCVSCNKSYYSNKELLEHNCSKIPLVEKEKFLCPICDKLFYRDTYLRKHLKTHVQRSKTVKFPGVVCEVCGLSLETKNSYYLHKKNHEEPAYSCEICKKKFYRQDSLKQHILGHQKTPEIECNVCKKKFKTKKILMSHMKYHNNDKLHKCPLCDASFKQRANLNRHLKGSHKENKSKCVVIEYYNCPICAKSIKLRSSLLRHLRKVHSDISNVDLSCLKPKLFTNSGHSRVNENNNEEKAAPSDNLCDNLMSNSLEFDDQINNLLNSAENNSAIHKQAVDNLVKELDLGTKKELKQQREVCLSIPDLTEADQEITLDKNAYILENGTIVQPQGDSDNVIIYVLDQAYS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -