Aver005299.1
Basic Information
- Insect
- Asbolus verrucosus
- Gene Symbol
- -
- Assembly
- GCA_004193795.1
- Location
- QDEB01048439.1:691-8438[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 35 0.00032 0.016 15.4 3.1 1 23 52 75 52 75 0.97 2 35 0.07 3.6 8.0 3.1 1 23 84 107 84 107 0.97 3 35 0.005 0.25 11.6 1.4 1 23 116 139 116 139 0.96 4 35 0.0028 0.14 12.4 0.8 1 23 148 171 148 171 0.95 5 35 0.023 1.2 9.5 2.3 1 23 181 204 181 204 0.98 6 35 0.0077 0.39 11.0 4.1 1 23 213 236 213 236 0.97 7 35 0.02 1 9.7 1.8 1 23 246 269 246 269 0.98 8 35 0.047 2.4 8.5 2.2 1 21 310 330 310 333 0.90 9 35 1.8 89 3.6 0.3 1 23 353 376 353 376 0.88 10 35 0.0084 0.43 10.9 2.9 2 23 432 454 431 454 0.97 11 35 0.0023 0.12 12.6 3.5 1 23 463 486 463 486 0.98 12 35 0.45 23 5.4 0.7 1 23 495 518 495 518 0.90 13 35 0.026 1.3 9.4 2.5 1 23 527 550 527 550 0.96 14 35 0.029 1.5 9.2 3.3 1 23 559 582 559 582 0.94 15 35 0.0008 0.041 14.1 1.1 2 23 592 614 591 614 0.95 16 35 1.9 98 3.5 3.5 1 23 623 646 623 646 0.93 17 35 4.5 2.3e+02 2.3 1.4 1 22 655 676 655 678 0.83 18 35 0.017 0.85 9.9 5.1 1 23 687 710 687 710 0.95 19 35 0.72 36 4.8 0.3 1 23 717 740 717 740 0.94 20 35 0.12 5.9 7.3 3.5 1 23 785 808 785 808 0.97 21 35 0.0023 0.12 12.7 4.1 1 23 817 840 817 840 0.93 22 35 0.00069 0.035 14.3 1.8 1 23 849 872 849 872 0.98 23 35 0.0014 0.071 13.3 2.5 1 23 881 904 881 904 0.97 24 35 0.056 2.8 8.3 4.1 1 23 913 936 913 936 0.92 25 35 0.0064 0.33 11.3 1.5 1 23 945 968 945 968 0.96 26 35 0.0042 0.21 11.9 3.8 1 23 977 1000 977 1000 0.96 27 35 0.014 0.69 10.2 0.9 1 23 1025 1048 1025 1048 0.97 28 35 0.031 1.6 9.1 3.5 1 23 1057 1080 1057 1080 0.97 29 35 0.00011 0.0054 16.9 3.6 1 23 1089 1112 1089 1112 0.96 30 35 0.03 1.5 9.1 0.9 3 23 1123 1144 1121 1144 0.95 31 35 0.082 4.2 7.8 3.2 1 23 1153 1176 1153 1176 0.97 32 35 0.0046 0.23 11.7 0.2 2 23 1186 1208 1185 1208 0.92 33 35 0.067 3.4 8.0 0.9 1 23 1249 1272 1249 1272 0.94 34 35 0.069 3.5 8.0 1.6 1 23 1281 1304 1281 1304 0.91 35 35 0.0021 0.11 12.8 1.6 1 21 1313 1333 1313 1334 0.95
Sequence Information
- Coding Sequence
- TTGGTATTGCTGAAACATGTTATCAATTGTAACGCCGTAATTTCGGTTCACCAAGAGCTAAAAGTTCAATATGACTTTGGCAGCATACTCAGAAGTTACTTGCTAGCAAGTGGTTCTAATGCTGACAGCAACAAAACGAAAGAGGttaagtggtttaaatgtgaacattgtcaGTTCCAAACAAAATATGCGGACAATTTGAGGCGCCACATCATGATAAGACACGAGGTTCCCAAAGAGATCGAGTGGTTCGAATGCGACCGATGTCCGCACAAAACTAGACTGAAAAGCTATTTGAACATACACAAAATGATGAAACATACTGATCCACAAAACTTGAAGTGGTTTGAATGTCTACAATGtgaatacaaaacaaaatacaaatccAGTTTAAACAATCACGTACTAGTAAAGCACACCAACCCGGAGGATATCAAGTGGTTTACATGTGCACAATGCCCTTTCAAAGCCAAAAATGCGTCGAATTTGCGAAAACACGTGACTTCAAGGCACACAAACCCTGAAGATGTTACGCGATGGTTCCAGTGTGACCAATGCGTGTACAAGTCGAAATATAAGTCGTCTTTTCGAGAACACGTCTTAACTCAACACACGAACCCGGAAGACATCAAGTGGTTCGAATGTGAACATTGCGCTTTCAAGACgaagaataaattttcgttgaaaaaACACATTCTGAGGATGCATATAGATTGCGAAATGTTGATAAAGCCGTTCAAATGCGATCGGTGCTCATATGCGACGGCAGTTAAGGAGTATTTGCATAAACATCTCTCCACCATACATCTGGATGCGAAAGATATTAAGTGGTTCGGGTGTGAGAAATGTTCGTTTAAGACCAAAGCCGAgaggattttgaaaaaacacgttTTGGTAAGACATGGGAACCCGGACAATGTcgagtggtttaaatgtgagcAGTGTGAGTTTAAATCGGTACATAAAACTTCTTTGCAAAAGCACGTGGTGGCTAGACATACCAGGGATGAGGATATTAACTGGCTTCTCTGTCATCACTGTGAATTCAGAAAACCCTACAAATGTGAATATTGCGAATTTGCAACAAATCTCAAAGTGATTTTGTACAATCATCTTAACATCGATCACAAAAGGTTAGAACTTAGCAGACAGTTGAAGAGCTATAGTTGTGAAAATTGCGACTGTCAGACGTATTCGTTGTTGGTGTTAGCGAAGCACCCCTGCAAACGAAAAGTCAGCAgcaattttactgaaaattggCGACAATGGAGGCTTCCCGATAAAAAGTGGTcgaaatgtgaacaatgtccATATGAAACAAAATGGAGAAGTCACTTAAAAAGACACATGCTGACAAGACACACCGACCCGGAGAAAATCAAGTGGTTCAAGTGCCGCCAATGTCCGTACCAAGCTAAGCAAAAAGTGCACTTGCAGACGCACATGTTGACGAAACACGCCGATCCGGGAGATATTCATTGGTttgaatgtgaacaatgtccCTTTAAAACCAAGCGCAAATTCATCTTGGAGAGGCATGCGTTGGCCAAACACGCGAACCCGGAGGACATCACGTGGTTTCAGTGCGACCGGTGCCCGCACAGGGCCAAACAGAAGTCCAAGTTGATGATCCACACTCTGTCCCGACATACGAACTCCGAAGACATCGAGTGGTTCCACTGCACTCAGTGTCCgcacaaaacaaaattgaaaggtAACCTGAAAGAGCACATGGCGCTGATGCACGGCTCTCCAGAGAGCATCAGGAGGCTGAGATGCGAACTGTGCTCGTACGAGACTAAGCAGAAGTATAACTTGAAGAGGCACGTTCTAGTCAAACACACGAATCCGGAAGATATCCGGTGGTTCGAGTGTGAGCAGTGTTCGTACAAGACCAAGCTCAAGAATCATTTGGATTTGCACAAAGTGACCAAACATGCCAAACCAGAGGAGATTTCGTGGTTTAAGTGCGAACAGTGTTCGTTTAAAACGAAACGGAAGTTTATTCTGAACGGTCACGTGTTAGCGAAGCATACTGACTCGGAGGACAtcaagtggtttaaatgtgagcATTGTGCGCACAAAACGAAGCGGAAATACAGCTTAAAGGAGCATATTTTGGCCAAACATAAACCTTCTGAAGAAATGTACAGATGCGACTACTGCGAGCTCGAAACCCACCTAAAAGTCGTCCTCAACAACCACATTGAAGTCGCGCACAAGGAACTGAGGAGCGATTATGACACAGAATTCACACTGAAGAAATACTGCTGTCAGAATTGCGATTTTCAGACTTTCTCTCTCTTGGTGTTGACCAAACACCTCGCCACGGAAACCGTCGAAATCAAGTGGTTCAAGTGCGCGTATTGCTCCTTCAAAACCAAACGGAAACTGTCTTTGGACAGGCACACCCTAAAACAGCACGCAGGCTTCGAAGATGGCAAAGGGTTCAAGTGTGAGCAGTGCCAGTACAGAGCCAAGCGAAAGTATCACTTAAAACGCCACGTCTTAGCCAAGCATACTGACCCCGAAGATGTccaatggtttaaatgtgaacaatgtccCTTCACCACTATCCGCAAATTCGTTCTGCAACGCCACATGCTGACGAAGCACACGAATCCCGAAGACATTCACTGGTTCCAGTGTGATCAATGTTCTTATAAAACCAAACAGAAGGATAATTTGGGCAAGCACACTTCCACCAATCACAGGCCTCCGGAGGATATCAAGTGGTTCAAGTGCAACCATTGCTTGTTCATGGCGAAGCACAAGATCAACCTAAAGAGGCACATAGTCGAGAGGCATACCAATCCGGAAGATATCAAATGGTttgaatgtgaacaatgttcataTAAGGCCAAGCAGAAGGTACATTTGCAGGCGCATGTGCTATCGAAACACACGAGTTCTGAAGATATTAAATGGTTCACGTGTGAACTGTGCTCACACAAGACGAAAGAGAAATCTAGTTTGAAGAAACACATGTTGTGGAAGCACACGAATCCGGAAGATGTGCGGTGGTTTAAGTGTGAGGAGTGTTCTTGCCGCCATCGAAAGCATGAAAACTGGTTTGAGTGTGACCAATGTCCATTTGGAAGCAAACGCAAATTCGTGTTGCAAAGGCACGTGTTAACGAAACACACAAATCCTGAAGATATagaatggtttcaatgtgaccAATGCCCCCACAAAACCAAAcagaagtttaaattattgatgcACATTTCATCCCAACATGGAAATCCGGACAGCATCAGATGGTTCAGGTGCAGTCAGTGCCCTCACAAAACCAAacagaaatcaaatttaaaaaaacacattgcAGTGAAACACAGGCCTCTCGAAGATATCGAATGGTTTGGCTGTGAGCAGTGTTCAtacaaagcaaaattaaaatcaaacttGAAAAGGCATGTCATAATGAAACATAATAGTcctgaaaacataaaatggttTGAATGTGAACATTGCCTCTTCAAAACCAAGCTGAAATCGTCGCTAAAAGAGCACGTTTTAACCAAGCATACGAGCCCCGAAGATATCAACTGGCTGgaatgtgaacaatgtccATACAAAGCCAAACGGAAGTACAACCTAGAAATGCACCTCTTGGCCAACCACACCAACCCTGAAGACATAAAATGGTTCGAATGTGCGCAATGCGCGTTCAAAACGAAGCGGAAGTGCATTTTGACGAGGCACGTGATGGCGAAGCACACGAAAGCCGAAGACATCAGATGGTTCGAGTGTGGCCAATGCTCGTTCAAAACCAAGCGCGAGATCAATCTGAAAGAGCACGTTTATGTGAAACACGCCAAGTTTGAGGATATTCAGTGGTTTGAATGTGGGCAATGTCCGTTCAAGGCGAAACAGAAGAAGAAGTTGAGGAAGCACACGGCGGACAAACACGGTGCTATAGAAAACGTGAAATGGTTCGAGTGCGAGCTGTGCGCGCACAAAACTAAGCGCAAATCTAACCTGAAAAAGCACCTGTtaAATGTGCTTCCT
- Protein Sequence
- LVLLKHVINCNAVISVHQELKVQYDFGSILRSYLLASGSNADSNKTKEVKWFKCEHCQFQTKYADNLRRHIMIRHEVPKEIEWFECDRCPHKTRLKSYLNIHKMMKHTDPQNLKWFECLQCEYKTKYKSSLNNHVLVKHTNPEDIKWFTCAQCPFKAKNASNLRKHVTSRHTNPEDVTRWFQCDQCVYKSKYKSSFREHVLTQHTNPEDIKWFECEHCAFKTKNKFSLKKHILRMHIDCEMLIKPFKCDRCSYATAVKEYLHKHLSTIHLDAKDIKWFGCEKCSFKTKAERILKKHVLVRHGNPDNVEWFKCEQCEFKSVHKTSLQKHVVARHTRDEDINWLLCHHCEFRKPYKCEYCEFATNLKVILYNHLNIDHKRLELSRQLKSYSCENCDCQTYSLLVLAKHPCKRKVSSNFTENWRQWRLPDKKWSKCEQCPYETKWRSHLKRHMLTRHTDPEKIKWFKCRQCPYQAKQKVHLQTHMLTKHADPGDIHWFECEQCPFKTKRKFILERHALAKHANPEDITWFQCDRCPHRAKQKSKLMIHTLSRHTNSEDIEWFHCTQCPHKTKLKGNLKEHMALMHGSPESIRRLRCELCSYETKQKYNLKRHVLVKHTNPEDIRWFECEQCSYKTKLKNHLDLHKVTKHAKPEEISWFKCEQCSFKTKRKFILNGHVLAKHTDSEDIKWFKCEHCAHKTKRKYSLKEHILAKHKPSEEMYRCDYCELETHLKVVLNNHIEVAHKELRSDYDTEFTLKKYCCQNCDFQTFSLLVLTKHLATETVEIKWFKCAYCSFKTKRKLSLDRHTLKQHAGFEDGKGFKCEQCQYRAKRKYHLKRHVLAKHTDPEDVQWFKCEQCPFTTIRKFVLQRHMLTKHTNPEDIHWFQCDQCSYKTKQKDNLGKHTSTNHRPPEDIKWFKCNHCLFMAKHKINLKRHIVERHTNPEDIKWFECEQCSYKAKQKVHLQAHVLSKHTSSEDIKWFTCELCSHKTKEKSSLKKHMLWKHTNPEDVRWFKCEECSCRHRKHENWFECDQCPFGSKRKFVLQRHVLTKHTNPEDIEWFQCDQCPHKTKQKFKLLMHISSQHGNPDSIRWFRCSQCPHKTKQKSNLKKHIAVKHRPLEDIEWFGCEQCSYKAKLKSNLKRHVIMKHNSPENIKWFECEHCLFKTKLKSSLKEHVLTKHTSPEDINWLECEQCPYKAKRKYNLEMHLLANHTNPEDIKWFECAQCAFKTKRKCILTRHVMAKHTKAEDIRWFECGQCSFKTKREINLKEHVYVKHAKFEDIQWFECGQCPFKAKQKKKLRKHTADKHGAIENVKWFECELCAHKTKRKSNLKKHLLNVLP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -