Aver006030.1
Basic Information
- Insect
- Asbolus verrucosus
- Gene Symbol
- -
- Assembly
- GCA_004193795.1
- Location
- QDEB01055573.1:1353-3208[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.041 2.1 8.7 0.1 2 21 32 51 31 52 0.92 2 13 3.9 2e+02 2.5 1.5 1 15 99 110 99 119 0.76 3 13 0.087 4.4 7.7 1.0 2 20 215 233 214 235 0.92 4 13 2.4e-05 0.0012 18.9 1.9 1 23 253 275 253 275 0.98 5 13 0.009 0.46 10.8 0.8 1 19 305 322 305 326 0.80 6 13 9.4e-06 0.00048 20.2 1.7 1 23 332 354 332 354 0.97 7 13 6.6e-05 0.0034 17.5 0.3 1 21 360 380 360 381 0.95 8 13 0.00027 0.013 15.6 1.3 1 23 388 410 388 410 0.97 9 13 2.3e-06 0.00012 22.1 2.8 1 23 416 438 416 438 0.98 10 13 0.00011 0.0058 16.8 9.1 1 23 444 466 444 466 0.99 11 13 1.3e-06 6.4e-05 22.9 0.4 1 23 472 494 472 494 0.98 12 13 1.1e-05 0.00055 20.0 0.2 1 23 498 520 498 520 0.98 13 13 0.002 0.099 12.9 0.5 1 23 528 551 528 552 0.96
Sequence Information
- Coding Sequence
- ATGGTGGCACTGAACTGTCCCTTATGCTGCAACGAAACGTTCCCGTCGCACACGTCGCTAAAATGCCACATTTTAAACATCCTGGACAACTTGACGTGCCCCTCGTGCCACCTGAAGTTCCCCAAACTGGCCGAATTAGCGGAGCACCTGGAGAGCAACTGCGCGGACGCCCCGGAGGCGGCGGAGACGAAAACCGAGCATGAGGCCCCTCAAGAAGGGAGCATTTTGGCCAGGGCTCTGCTGGCGAGCCCCCGACCCGAAGTCGACGGGAAAACGGAAATGGAGGAGTCCCAGTATTACTGCCAGATGTGCGACGTGCACTTCGACGACATCGAGACGCACCTCAAGAATTTCCACGAGGGACAAGAGATTATTTTGGAAGAAGAGGGGGGGAGCGAACGTAACGAGGACGTGACAGAAGAGACCGTTTTCATCATAGACCCGCCCGAAGCCGAAAGCAACGAAGCAGACAAGACGGCCGCGGAGAAAAAACCGAACACGGTCACCCAGGAGGATTTCAGAGACAGAGAGGGGCGGCTGTACACGAGGAAGTTCGTGAAAATCGACCAGTTCTGGCTGCAGAACGACCCCCTGCAGAAGCTGGTGGTGAACGACGCCAAGGACGAGCTCGTGGAGATCAACAAGTGCCCCAACTGCAGCCTCTACTTCTCCACCGCGGACCTGTTCAAGGGGCACGCGTGTCAAAATTCGGACGATTTCAAGGGGCTCAAAGACAAGAAGCCCCTGATCGGCCCCTTCAATTGCGAGATCTGCAACACGACTTTCCCCACGTTCAAGTCGCTGCGGCTGCACCGCCGCATGCACGACCCGATCAAGGCGCGCGAGATCGAGGCCCCCTCGAAGTACGGCCTGTTCGGGAACGACGTCGCCGACGAGCCGGTCAGGCACATGTTCATCtgcaaaatatgcaacaaaaCGTACGACAAGCAGTACGAGTTGGTACACATGAACTCGCACAGTTCGAACAACGGCTTCAACTGCGAGGTGTGCAACAGGAAGTTCTTCACCAAGACCAACCTGGAGATGCACATGAAGGCGCATTCCAACAACAAAAAGTTCACGTGTTCGTACTGCAAGAAACCGTTCGTGACCTACGACGCCCTCAACGAGCACCTCTTGAACCAGTGCCAGAAGAGGCCCTACGCCTGTCAGTTCTGCGGGCGAAGGTTCGCGAGGCCCCACGAGAAGGTCAAGCACGAGAGGATCCACACGGGGGAGAAGCCGCACGTGTGCGACATCTGCGGCAAGGCCTTCCGGGTGAGCTACTGCCTGACGTTGCACCTGCGCACCCACTCGGGCACCAGGCCCTACCAGTGCAAGCACTGCGGGAAGAGGTTCAAGTCCCACAGCGTCTACAACCACCACCTGCTGACCCACTCGGACGTGAGGGCCTACAAGTGTCCCTACTGCCCGAAGGCCTTCAAGACGAGCGTGCAGCTGGCGGGGCACAAGAACAGCCACATCAAGCCCTTCACGTGCACCGAATGCAACAGGCCCTTCGCGTCCCTGTACGCGGTGAGGGCGCACATGGAGACGCACAAGAGGGACAACAACCTGAAGTACGAGTGTTGGATGTGCGGGGCGCTCTATTCGAGGGCGTTCGCCCTCAGGGACCATCTCAAGCAGCAGCACCACCAGGACGGGGAGAAGGAGAAGGCGGTGGCCTTGAACGTGGACGAGGAGATGGAGGCGACCAATTCGATTCTGGTCAGCGAGGACGACATCATTTTGGGGCTGGACGGGGCCACCAACATCGAGATAATCGAAAACGAGAACGAGTAG
- Protein Sequence
- MVALNCPLCCNETFPSHTSLKCHILNILDNLTCPSCHLKFPKLAELAEHLESNCADAPEAAETKTEHEAPQEGSILARALLASPRPEVDGKTEMEESQYYCQMCDVHFDDIETHLKNFHEGQEIILEEEGGSERNEDVTEETVFIIDPPEAESNEADKTAAEKKPNTVTQEDFRDREGRLYTRKFVKIDQFWLQNDPLQKLVVNDAKDELVEINKCPNCSLYFSTADLFKGHACQNSDDFKGLKDKKPLIGPFNCEICNTTFPTFKSLRLHRRMHDPIKAREIEAPSKYGLFGNDVADEPVRHMFICKICNKTYDKQYELVHMNSHSSNNGFNCEVCNRKFFTKTNLEMHMKAHSNNKKFTCSYCKKPFVTYDALNEHLLNQCQKRPYACQFCGRRFARPHEKVKHERIHTGEKPHVCDICGKAFRVSYCLTLHLRTHSGTRPYQCKHCGKRFKSHSVYNHHLLTHSDVRAYKCPYCPKAFKTSVQLAGHKNSHIKPFTCTECNRPFASLYAVRAHMETHKRDNNLKYECWMCGALYSRAFALRDHLKQQHHQDGEKEKAVALNVDEEMEATNSILVSEDDIILGLDGATNIEIIENENE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -