Basic Information

Insect: Asbolus verrucosus
Gene Symbol: GCN1
Assembly: GCA_004193795.1
Location: QDEB01038392.1:1326-9766[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 20 0.89 45 4.5 0.7 6 22 141 157 139 160 0.89

2 20 1.9 95 3.5 4.9 1 23 166 187 166 187 0.74

3 20 1.1e-06 5.8e-05 23.1 1.1 1 23 196 218 196 218 0.98

4 20 0.0013 0.068 13.4 0.7 1 23 224 246 224 246 0.96

5 20 0.013 0.68 10.2 0.9 1 23 252 274 252 274 0.95

6 20 0.0048 0.24 11.7 1.7 1 23 287 309 287 309 0.97

7 20 9.4e-05 0.0048 17.0 1.6 1 23 320 342 320 342 0.96

8 20 0.0023 0.12 12.7 3.8 1 23 347 369 347 369 0.95

9 20 2.3e-05 0.0012 19.0 3.3 1 23 375 397 375 397 0.98

10 20 1.3 68 4.0 1.5 6 22 530 546 528 549 0.89

11 20 0.0037 0.19 12.0 0.7 1 23 555 576 555 576 0.96

12 20 0.00086 0.044 14.0 0.6 1 23 582 604 582 604 0.96

13 20 2.9e-06 0.00015 21.8 0.4 1 23 610 632 610 632 0.98

14 20 0.0067 0.34 11.2 0.4 1 23 638 660 638 660 0.95

15 20 0.0027 0.13 12.5 2.5 1 23 670 692 670 692 0.97

16 20 5.2e-05 0.0026 17.8 0.8 1 23 703 725 703 725 0.98

17 20 0.019 0.99 9.7 0.9 1 23 730 752 730 752 0.94

18 20 1.5e-05 0.00076 19.5 0.9 1 23 758 780 758 780 0.97

19 20 1.8e-05 0.00092 19.3 5.7 1 23 786 808 786 808 0.96

20 20 0.0012 0.059 13.6 0.4 1 17 814 830 814 831 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	20	0.89	45	4.5	0.7	6	22	141	157	139	160	0.89
2	20	1.9	95	3.5	4.9	1	23	166	187	166	187	0.74
3	20	1.1e-06	5.8e-05	23.1	1.1	1	23	196	218	196	218	0.98
4	20	0.0013	0.068	13.4	0.7	1	23	224	246	224	246	0.96
5	20	0.013	0.68	10.2	0.9	1	23	252	274	252	274	0.95
6	20	0.0048	0.24	11.7	1.7	1	23	287	309	287	309	0.97
7	20	9.4e-05	0.0048	17.0	1.6	1	23	320	342	320	342	0.96
8	20	0.0023	0.12	12.7	3.8	1	23	347	369	347	369	0.95
9	20	2.3e-05	0.0012	19.0	3.3	1	23	375	397	375	397	0.98
10	20	1.3	68	4.0	1.5	6	22	530	546	528	549	0.89
11	20	0.0037	0.19	12.0	0.7	1	23	555	576	555	576	0.96
12	20	0.00086	0.044	14.0	0.6	1	23	582	604	582	604	0.96
13	20	2.9e-06	0.00015	21.8	0.4	1	23	610	632	610	632	0.98
14	20	0.0067	0.34	11.2	0.4	1	23	638	660	638	660	0.95
15	20	0.0027	0.13	12.5	2.5	1	23	670	692	670	692	0.97
16	20	5.2e-05	0.0026	17.8	0.8	1	23	703	725	703	725	0.98
17	20	0.019	0.99	9.7	0.9	1	23	730	752	730	752	0.94
18	20	1.5e-05	0.00076	19.5	0.9	1	23	758	780	758	780	0.97
19	20	1.8e-05	0.00092	19.3	5.7	1	23	786	808	786	808	0.96
20	20	0.0012	0.059	13.6	0.4	1	17	814	830	814	831	0.94

Sequence Information

Coding Sequence: attaatattaatgatgaATTGCCTAAAAACAtatgtgaaaaatgtattggTGAGGTCATACGAtgctacagttttaaaaagaattatgaCGCCTCAGAAGTACTATTATTAACTATTGTTGCTAATGAAAGTGAGAAAGTAATTCAGAAAACTAATAATCGAGCTgtggaaacaaaattaaattcacctGATGATGATGAAGAAGAACGTAttgtagaaaaattagaatattctgaaactgaaatttatcaGTTGTCTGTTgatgaagatataaaaacagaaagtTCAGAAATTCTAGATGAAAATGAAAGCTGTGAAACCAACAATAACAAGGAAGAAGTTTCCAAGttaaaaaacatcaataattctaataaaacaaatccGCCAAGGAAAATTAGATCAAAAGTTTTTACATGCAGTTGCCAAGAAACGTTTCCATCACGATTAGAACTTCAAAAACACAGGAAAGAAGAGAAACATCCCCTTCCACGTActcatttttgtgaaatatgcAAGAAATATTTCACTCGGCAAGGTTTTTATAAACACAAACAACTGCACGAAAAACAGGATGGTGGAAGACGGTTCCCATGCAATTATTGTGAAATGAAGTTTACTACAAGTGGCAACTTAAAAAGACATGTAATGACGCATACAGGAGAGAGACCTCATGTTTGTGAATTTTGTGGAAAGGGATATATTCAGTTGGAAACACTAAAAGAACATAGAACAATTCACACAGGTGAAAAGCCGTATCTTTGTATGAATTGCGGGCTAAGATATAGGTACAGAGTCACATATAAAGTGCACATACAAAGCCACTGCAAAAGAAACATTTCGACAGGGACTAAGCAATCTTTTGTTTGTGAATATTGTGGACAAACTTGCGGAAATTTATCGGGTTATAAGCTTCATTTGTACAGGCATGGAAAACTCGAAAAACATATTGAAGATAAGTATCAGTGTAAGATTTGTAAAAGAGGCTTTACAACACAGGGTAGtctaaattatcattttctgttACATGGTGAAAGACAGTTTTTGTGCAATGTGTGTGGAAAACGTTTTCATCACGCACCTACTTTGAGAGAACATAGTAAGACTCATACTGGTGAAAAACCGTATTCGTGTAAATTTTGCGATAAGACGTTTAGACAGCAGCAAATGCTTCAGCAACATGTATACACTCATACGGGGGATAAACCGCATATGAATCCCAATGATGAATTgccaaaaaatatatgtgaaaCATGTATTAATGAACTCATacgattttacaattttaaaaagaattatgaCGCTGCAGAATTGACTTTATTAACTATTGTTGAAAAACTGGCAGTTGAATCTAATAACTTGGAAGAAAATTTAGAGGGTACTGAAGCTGCAATTTATGAACTTTGTTGCAATGAAGATATGAcagtaaaaaaatccaaaaatgaaaagtgtgaaagtaataataatgatgattgTTTGAATAGTGATGTAaatagagaattaaaaaaaaaatcaaaaaatgtaaataagaatagaaaaattaatggaaaaaagcagttaaaagttaaatcaaaaatttttacatgttcTTGCGAAAGGACGTTTACATCACAGTTAGAATTCCGCCAACACAGAAAAGAAGAGAAGCATCCCCTCCTCCGCACCCATCCAtgtgaaatttgcaaaaaaatcttcaCTCCCACGGGCCTCTGGAAGCACAAGCTTATGCACAAAAGTGAAAAGCGACACATTTGCGATTTTTGCGGGGTGAAATTCCGGGTAGGAGCAAATTTAAGAAGACACATTATGCAACATACAGGAGAAAGACCATATATTTGCGAATTTTGTGGAAAAGGATTTATTCGAAATGAATCGTTAAAAGTGCACAGGCGGATTCATACTGGCGAAAAGCCCTATCTTTGTGCGTATTGCGGGCGAAGTTTTAGGGATGAACTCGTTTACAATGGACATTTGCGAAGGCACACCCATAAAAATTTCTTGGATGAAACTTTCGTGTGTTCATATTGTGGAAAAACATGCGCCAGTCTAACAGGTTACAAGCTTCATTTGTACAGACACGGACAAGTGAAGATTAATGAAAGAGACAAGTATCAGTGtgatgtttgtaaaaaattttataccaCACAAGCCGGTCTGAATAATCATCTCGTGCGTCATggtgaaaagaaattttcctGTATTGACTGTGGAAAAGGTTTCTATTACAAACATGCCTTAGATTCACATGCAATGAGTCATTCAGGTGAAAAACCGTATTCATGTGATTTTTGTGATAAGACGTTTGCGCGTCAGAACGGGCTTCAAAAGCATGTTTATATTCATACAAGTGACAAACCGCatgcttgtaatttttgtccGAAGAAGTTTAGGCAGAGCACTCATTTAACACGACATTTGCGGGTTCATAGTGGTGAAAGACCTTACATTTGTAAATACTGCGATAAATCTTTTCCCCATGCAAGCACTCTAACTCTTGCAAAAGCGCTGAAGGATCTTCCATATAGAGTTCAGACTGCTAGTCTAAAGCAACGCAAAGAGGTTATAGAAAGTGTAATAGATGTTTTACAAAATCCCGGTGagttattatcaaataaaattccgCACTCATATGTAAATGCCCCGATTCtagcaataaatgaaaatattgtaaaaggAATTTGCCGAGTAATTCAGTTAACGTTACCTCGATATCGAGACAGTTCCTCCCAACTGTTGGTCAGAAACCTAATTGTTGCTTTATTAGAGAAACATTCCGAGTCTGCTATAAAATGTTTGTCCTTAATGCTTGTGGACATAGCATCCCAACACAAAAATCTTGTTGTCACCACAAACACTTGTCAGACTGGTCTTTATGCTTTGCATTGGTCATGTCTGGTCCTTACAGTTGGCTGGAAGGTCAATCAGAAGTGTCTTGAAACCTACCTTTCTCAAATTATTGAGACACAGGCATTGCTTTTAACCACTGTTGTTGCCGCAGGCATTGAGAAACGTTCCACCAAGGCATTCAATCTTCTGAACAATTCGTGGAATACGGTAcctgaaagtgaaaaattatatctagAGAAACTGAAACAGATCGAGCAAACGCAGTATGTGGTCGTAATAGCCGCATGTTTGGCCAAAAGATTGTCTctgataaataaaagtgatcTGCTGAAAGAGTATTTGGACTCGTTGCTTgaaatctttataaaaaatttcgtcaGTTGCAAAACTAGACCTTTACCGGAGGTGATCATAGCGACTTATCCTCTACTAAAGCAACTGACTCAcgaattgttcaaaaaaaatctgtggCCTTCGCTCCAAAAAGCAATGTTACGAAACCCGGAAATAATCCTCGAGTGTGTTGGGCTCGTGATATCCGGTCTCAGTTTAGATCTGAGCCCGTATGCCATCGACATCGGGAATAGCTTGATTGCAAATTTGTATTCGAAGGATGATCAAGCGAGAAGCGAAGCGGCGGATGCTTGTAAGCGTCTAACAGAACAAATTAGCGATTCTAAAGcgataaatgaattattaaaaaaaactttcgcCGTGTTTCATGGGTCCGAAGGCAAACTGACCGTGGTGGATCATAAAATTAGTGTCTTACAAGCAGCCGGTAATTTTAGCCACAATAATGTCACTGGTGGACATTTGCAAGAATTAATCGCGACCATCGccgattattttattaaaatattagagaCCGAAGTCCATGAAAAGACTCTATGTCACGCTTTAGATATGTTCGCTTTATGGGGGTCGAAATTCGGCAGCGAAATCCCTAAAAAAGTTATTGAGGCTTTCAAGAACGGAATGGGTTTGAAAACTTCTACACCTCTAGTCAGGATTGCTTATATCAAATGCATGCTCGTTTGTTTTAACACGAATTCAATCGAACAAGGCTCCTCACTAGtaccagttttattaaaagcagTCGACAGAGCTGTAGCTCAACCGACGCAATGTTTATCAGTAACTGAAGGTTTATGTGCTACTTGCATGCTCCTCAAACTGGTTTCAGTAGTGGGAGAAAAAGAGAATAACTTTCAGAATCTTTGGAACGCCCTTTTAGATATGGATAAACAGATTTTCGTTTCCGAAAAATTCCTATCGATCACAGGAGATGACggtttaatttatgtaatgcagttatgtgaaaaattactCATAGAATACCCAGAGAAGCTCAATGGAAAGAATTCACCACTCCACAGAGCTGTTTTACACTGTGTCATTTTCGGTTCTGCACGTGTCAGGCGGAAATGTTTGACGGTTTTGAAACGGATGGTTGGGGGTTTGGGAGGTCCCACGCTAGCACGTGCTCTCTTCAAAGAACTGCAGAATTTTTTGGAAACGGCGAAAGTGCAAACGAGGATGGAAAAAGAGTACAAGGAGCAGAGCGATAATGCGACTGAGGTTTCGCCACATGTTCTAGTGGAATGCATTACTTCGCTTTGTTCGTCGCCTGGTCTAGCACCAGAACATGTGCAGTTACTGGCTTTGGATGCTTTTCTTCCGACGCATCATCCGTCTGTTGTTGCCGTAGCGCCAGATTTATGGGTTAAAGTAATCAAGCATCTGAACATAAAACCGAAGAATCTGATTGCTCAACAAGctgatttctttaaaaaggtGCTGGTACAAGAGTACAACACATCGCCGactAACGAAAACGCTTTGTCCACGACGGTATCTTTGAATGCTGAAGTAATTTTGCCGTCTCTAATAGAAACAGTTGCCAGTAATTTACAAGATCCAAGAATCTGTCAAGTCTCTAAGGatgattattttactttcttaacACCAGAGGGCGAGCTGTATGACAAGAGTGTGGTTCCAGGTTACAAAGAACAGTTGGAAGAATTGCAATTACGGCGCGaaatagaagaaaagaaaaaaaaagatgggAAGGTTAAGCCACCGCAATATACACCTAAACAATTAGAAGCTATAAAGAATCAGAAAGTGAAAGAACAAGCCATCCGTGCAAGACTGTCAATTgtaacaCTAAACACTTCGATAATCAATTGCGTTTCGATGGTCCGAGCCGCGGCAAAGGGGAATCCCCTACAACTATCTCTATACTTTAAAGATTTACTTCCTTATATTTTAAACGGTCTTCAGTCACCATTGGCCGCCCCATATTTATCGAAATTGTTCACTGATCTTCGTGGTACTGTTTTCAATCATAATCTAGAAACTCTAGGTGAACTTATCGCTTTCGTTACTTTAAGACTGTTGAAGCCCCAGTGCGATTTAGACATCAATTGGGAGGCGGAGAATTTAAACAAAGCCATGGTTCGAACCGTATCCTTGATTCACGAGAGGacggttttgaaaaaatccgaagagagtcaaaattgttttactgTCCCAGCTTTTTGTTACacgtttgttttgttaaaatcgagTTTGTTATCGAATTACGCGCGCAATCACGACGAACTAGTCCACGACGGACTTCAGATTGTCTCCGAGCATTCGAAATtgagagcgagcgagcaaaACGGACTCAGAGACATCTACGACCCTCAGTACCTTCCGATCAGGCAGATGTTCGAACTACTCGTGGAAATCATAAGTAGTACCACTGGTAGAATCCAGTCGCAGGCCGAAGCTTGTCTTTTGGACGTGGCAGCTTGCGCCAGTGGCGAAGTGGGGTGTGCTAAAGCCACCCTTAGCGAAATCGACGTGTTGTTAGGAGGTTTACAAAATCCCGCCGTCGTGGTGAGAGACGCGGCCTTGCGAAGTCTAACGATCATATTCTCGTCGTTGCCGACTTACGAAAGCGATCACGATTATGCGATGAAAGTGAGCAAGAGGATCTGGGTGGCTAAATTCGACGAAAACGAAGAGAACAGGGTGTTGGCCGATAAACTGTGGGAATTGGCGAAGTTAGATTTCCCGGCTTATCTCAGCGAGGAATTAATGTCGGATATAGAGCATCCGGTTGAGTGCGTACAATCGGCCGCGTCCAGAGCTCTGGCCGCTCTGCTGGAGAATAATCAGGAACAA
Protein Sequence: ININDELPKNICEKCIGEVIRCYSFKKNYDASEVLLLTIVANESEKVIQKTNNRAVETKLNSPDDDEEERIVEKLEYSETEIYQLSVDEDIKTESSEILDENESCETNNNKEEVSKLKNINNSNKTNPPRKIRSKVFTCSCQETFPSRLELQKHRKEEKHPLPRTHFCEICKKYFTRQGFYKHKQLHEKQDGGRRFPCNYCEMKFTTSGNLKRHVMTHTGERPHVCEFCGKGYIQLETLKEHRTIHTGEKPYLCMNCGLRYRYRVTYKVHIQSHCKRNISTGTKQSFVCEYCGQTCGNLSGYKLHLYRHGKLEKHIEDKYQCKICKRGFTTQGSLNYHFLLHGERQFLCNVCGKRFHHAPTLREHSKTHTGEKPYSCKFCDKTFRQQQMLQQHVYTHTGDKPHMNPNDELPKNICETCINELIRFYNFKKNYDAAELTLLTIVEKLAVESNNLEENLEGTEAAIYELCCNEDMTVKKSKNEKCESNNNDDCLNSDVNRELKKKSKNVNKNRKINGKKQLKVKSKIFTCSCERTFTSQLEFRQHRKEEKHPLLRTHPCEICKKIFTPTGLWKHKLMHKSEKRHICDFCGVKFRVGANLRRHIMQHTGERPYICEFCGKGFIRNESLKVHRRIHTGEKPYLCAYCGRSFRDELVYNGHLRRHTHKNFLDETFVCSYCGKTCASLTGYKLHLYRHGQVKINERDKYQCDVCKKFYTTQAGLNNHLVRHGEKKFSCIDCGKGFYYKHALDSHAMSHSGEKPYSCDFCDKTFARQNGLQKHVYIHTSDKPHACNFCPKKFRQSTHLTRHLRVHSGERPYICKYCDKSFPHASTLTLAKALKDLPYRVQTASLKQRKEVIESVIDVLQNPGELLSNKIPHSYVNAPILAINENIVKGICRVIQLTLPRYRDSSSQLLVRNLIVALLEKHSESAIKCLSLMLVDIASQHKNLVVTTNTCQTGLYALHWSCLVLTVGWKVNQKCLETYLSQIIETQALLLTTVVAAGIEKRSTKAFNLLNNSWNTVPESEKLYLEKLKQIEQTQYVVVIAACLAKRLSLINKSDLLKEYLDSLLEIFIKNFVSCKTRPLPEVIIATYPLLKQLTHELFKKNLWPSLQKAMLRNPEIILECVGLVISGLSLDLSPYAIDIGNSLIANLYSKDDQARSEAADACKRLTEQISDSKAINELLKKTFAVFHGSEGKLTVVDHKISVLQAAGNFSHNNVTGGHLQELIATIADYFIKILETEVHEKTLCHALDMFALWGSKFGSEIPKKVIEAFKNGMGLKTSTPLVRIAYIKCMLVCFNTNSIEQGSSLVPVLLKAVDRAVAQPTQCLSVTEGLCATCMLLKLVSVVGEKENNFQNLWNALLDMDKQIFVSEKFLSITGDDGLIYVMQLCEKLLIEYPEKLNGKNSPLHRAVLHCVIFGSARVRRKCLTVLKRMVGGLGGPTLARALFKELQNFLETAKVQTRMEKEYKEQSDNATEVSPHVLVECITSLCSSPGLAPEHVQLLALDAFLPTHHPSVVAVAPDLWVKVIKHLNIKPKNLIAQQADFFKKVLVQEYNTSPTNENALSTTVSLNAEVILPSLIETVASNLQDPRICQVSKDDYFTFLTPEGELYDKSVVPGYKEQLEELQLRREIEEKKKKDGKVKPPQYTPKQLEAIKNQKVKEQAIRARLSIVTLNTSIINCVSMVRAAAKGNPLQLSLYFKDLLPYILNGLQSPLAAPYLSKLFTDLRGTVFNHNLETLGELIAFVTLRLLKPQCDLDINWEAENLNKAMVRTVSLIHERTVLKKSEESQNCFTVPAFCYTFVLLKSSLLSNYARNHDELVHDGLQIVSEHSKLRASEQNGLRDIYDPQYLPIRQMFELLVEIISSTTGRIQSQAEACLLDVAACASGEVGCAKATLSEIDVLLGGLQNPAVVVRDAALRSLTIIFSSLPTYESDHDYAMKVSKRIWVAKFDENEENRVLADKLWELAKLDFPAYLSEELMSDIEHPVECVQSAASRALAALLENNQEQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -