Aver012150.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Asbolus verrucosus
Gene Symbol
RPH1
Assembly
GCA_004193795.1
Location
QDEB01111364.1:6235-8772[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 18 0.0086 0.43 10.9 1.3 1 23 105 128 105 128 0.93
2 18 0.0044 0.23 11.8 3.2 1 23 169 191 169 191 0.98
3 18 4.4e-05 0.0022 18.1 0.8 1 23 197 220 197 220 0.94
4 18 0.00011 0.0057 16.8 0.2 1 23 226 248 226 248 0.98
5 18 2.4e-06 0.00012 22.0 2.0 1 23 254 276 254 276 0.96
6 18 0.00025 0.013 15.7 3.0 1 23 282 304 282 304 0.98
7 18 7.6e-06 0.00038 20.5 3.7 1 23 310 332 310 332 0.98
8 18 0.0013 0.066 13.4 0.6 3 21 340 358 340 359 0.95
9 18 0.00058 0.03 14.5 2.7 3 23 392 413 391 413 0.95
10 18 0.00029 0.015 15.5 0.9 2 23 432 454 431 454 0.94
11 18 0.00012 0.0061 16.7 1.8 1 23 472 495 472 495 0.95
12 18 5.4e-07 2.8e-05 24.1 1.2 1 23 528 550 528 550 0.98
13 18 5.5e-06 0.00028 20.9 1.6 1 23 556 579 556 579 0.92
14 18 0.0021 0.11 12.8 0.6 1 23 585 607 585 607 0.97
15 18 2.5e-05 0.0013 18.8 4.4 1 23 613 635 613 635 0.96
16 18 1.4e-05 0.00069 19.7 0.8 1 19 641 659 641 660 0.97
17 18 0.00063 0.032 14.4 4.0 1 23 669 691 669 691 0.98
18 18 0.00015 0.0075 16.4 1.6 2 23 698 719 697 719 0.96

Sequence Information

Coding Sequence
TCaggaaaagcaataaaaatcgAGGAGGAGGTACcggacgacgacgacgacaaGAAACCGCCGATCGAGCGAATAAAACTGGAGTTGAACCACGCGGAAGTCGACCTCGTCGAGGAAATCTGCGAGACTTGTAAGAAACCCCACCGACCTGCCTGTTGCCAACAAGCCTCCCCAAAAGAGTTGTCGAGTTTCCTCAACTCGTACATATCGGACACCGAGCTGTACGAACCGGAAATCGGCATAGAACGCGTAAAAATTCCGACAGATAACGCCTTGATGAGCAAACCCGACGAAGACGACGCCGGCTTGTACTTCACCTGCCTGTACTGCCCGAAGATGTTCACTCTGAAGCGAGACGTACTCGAGCACGTGTGCGAAGAGCACGGCGAAGACTTCGACACGTCCTTCGTCCAGCGGCTGAAGAAGGAGAAGAGGAAGAACCCCCAGAAGGTAGACCGAGACGAAGTGAACGCGGCGAAAGTGGAGGTGGACGGGCGCACTTACTACAACTGCAAAGAGTGCGGTAAAAGCTTGTACTCCTCGTACACTTACGTCTGCCACATGAGAATCCACACGGGGGAGCGCCCCCACGCGTGCGATTTATGCGGGAAAAGGTTCAGAGTGAACCAGGGGTTGGTGCGCCACCTGCGGGAGACCCACCAAGGGATGCGGGACTTCCCCTGCGACTTATGCGGACGCATGTTTGCCACCCGCCGCAGCGCCGAAGAACACAGAAGGATACACACCAACGAGCGGCCCCACATGTGCGACCTCTGCGGCAAGAGCTTCAAGCAGAAAGCTTCGCTCTTCATCCACAGGAGGGCTCACGAAAACTCCTACGCCTTCAAGTGCAGCTCCTGCGATAAGGGCTTCCACACGCAGCGGTTGCTGATGGTGCACATCACCAAGCACACGGGGGAGAAGCCGTACAGATGTGACATCTGCCAGAGGTGCTTCAGGATCAAGTACGAGCTGAAGAGGCACCAGCTGGTGCATTCGGACGAGAAGCCGTGGGGTTGCGCCGAGTGCGGGCTGAGGTTCAGGCAGAAGCGTTATCTGATGAACCATACCAAATCGAAAGACGCGATAAAAAGCGAGGACGACCCTCCGAGCGACGAGGACGCCGAAAGAGCCGCCCCCAAGAGAATCAAACTCGAACTCGGCAAAGGCTTTTGCGAGATCTGCAACAAAACCATCAGCAGGAGCCGCGACCTGAAGCGGCACAGAGCTGTGTGTCACCCGCAGACGATCCTGAAGCGGTCCTTCGACGACGTCGCCGACTTGAGCACGAAAACGTGCACCGAGTGCAGCTTGACCTTCGCCAACCGTACGCTGCTGAAGAAGCACGTGAAGGACGCCCACGACGTGAAGCAGAAGCGCCACAGGCGCAAGAACAACGAGATCGTGGCCCACTTCTTCTGCGACGTGTGTGAGAAGGGCTTCACCAGGAAGTACGACATGGAGAAGCACAAGAGTCGGCTGCACGCCGACCGCCCGAAGGAGGGCGACACCAGCGCCAGGAAGAAGAACATGGAGCTGCTTAACCAGTGCAGGAAGCGCGATTCTGACGGCAAGGCCTTCTACAAGTGCGATTATTGCGAGCGGGTGTTCGCCCAGTCGTACAATCTGATGCGGCATCGGACTATACACACGGGGGTTCGCGCGTATTTCTGCCATATTTGCGGGAAGAGCTTCCGGATGTCCAACGGCTTGACGAGACACATCGACGCGTTCCATCACGGTGTTAAAAACTTCAGTTGCGACGTGTGCAAGAAGACTTTCACAGCGCGAGCCACCAGAGATGAGCATATGAACATCCACACCAACAACAGGCCTTTCGTCTGCGACGTCTGCGGCAAGTGCTTCAAGCAGAAGGCCTCTTTACACGTCCACAAGATGTTCCACACGGATATGTACAGGTTCCAGTGTAACAACTGCGGGAAGAAGTTCAGGAGGGCGCAGGATTTGAAGGTGCATAGTTGGTTGCATACGGGACACAGACCCTATTCTTGTCACAAGTGTAAAGCGGCCTTTAGATTAGGACATGATTTGAAGAGGCACCTGAGGATTCACGAGAAGGTGAACGACTGTGTGTGCAACGAATGCGGCTCCGTTTTTAGCCAAGAGAGGTATTTGAAAGTTCACAAGAAAATACACAAGAAACCGCAGATTAAGTTGGAAGACCCGCTGAAG
Protein Sequence
SGKAIKIEEEVPDDDDDKKPPIERIKLELNHAEVDLVEEICETCKKPHRPACCQQASPKELSSFLNSYISDTELYEPEIGIERVKIPTDNALMSKPDEDDAGLYFTCLYCPKMFTLKRDVLEHVCEEHGEDFDTSFVQRLKKEKRKNPQKVDRDEVNAAKVEVDGRTYYNCKECGKSLYSSYTYVCHMRIHTGERPHACDLCGKRFRVNQGLVRHLRETHQGMRDFPCDLCGRMFATRRSAEEHRRIHTNERPHMCDLCGKSFKQKASLFIHRRAHENSYAFKCSSCDKGFHTQRLLMVHITKHTGEKPYRCDICQRCFRIKYELKRHQLVHSDEKPWGCAECGLRFRQKRYLMNHTKSKDAIKSEDDPPSDEDAERAAPKRIKLELGKGFCEICNKTISRSRDLKRHRAVCHPQTILKRSFDDVADLSTKTCTECSLTFANRTLLKKHVKDAHDVKQKRHRRKNNEIVAHFFCDVCEKGFTRKYDMEKHKSRLHADRPKEGDTSARKKNMELLNQCRKRDSDGKAFYKCDYCERVFAQSYNLMRHRTIHTGVRAYFCHICGKSFRMSNGLTRHIDAFHHGVKNFSCDVCKKTFTARATRDEHMNIHTNNRPFVCDVCGKCFKQKASLHVHKMFHTDMYRFQCNNCGKKFRRAQDLKVHSWLHTGHRPYSCHKCKAAFRLGHDLKRHLRIHEKVNDCVCNECGSVFSQERYLKVHKKIHKKPQIKLEDPLK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
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90% Identity
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80% Identity
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