Aver012208.1
Basic Information
- Insect
- Asbolus verrucosus
- Gene Symbol
- -
- Assembly
- GCA_004193795.1
- Location
- QDEB01111961.1:132-2667[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 24 0.73 37 4.8 1.3 1 17 10 26 10 26 0.88 2 24 2.3 1.2e+02 3.2 0.3 3 10 40 47 39 52 0.86 3 24 0.0013 0.067 13.4 3.5 2 23 71 93 70 93 0.96 4 24 7.7e-05 0.0039 17.3 0.8 1 23 98 120 98 120 0.97 5 24 0.015 0.74 10.1 11.2 1 23 126 148 126 148 0.97 6 24 0.058 2.9 8.3 0.3 1 14 155 168 155 179 0.85 7 24 0.0003 0.015 15.4 1.2 3 23 186 207 185 207 0.97 8 24 0.00048 0.024 14.8 2.6 2 23 217 238 216 239 0.93 9 24 5e-05 0.0025 17.9 0.1 3 23 246 266 244 266 0.96 10 24 0.00011 0.0057 16.8 2.5 1 23 272 294 272 294 0.93 11 24 0.00049 0.025 14.8 2.0 1 23 300 323 300 323 0.94 12 24 2.4e-07 1.2e-05 25.2 1.6 1 23 329 351 329 351 0.98 13 24 0.1 5.2 7.5 3.7 3 23 383 404 383 404 0.98 14 24 2e-05 0.001 19.1 1.7 1 23 409 431 409 431 0.98 15 24 5.3e-05 0.0027 17.8 3.0 1 23 437 459 437 459 0.99 16 24 0.3 15 6.0 4.1 2 11 469 478 468 492 0.66 17 24 1.9e-05 0.00098 19.2 1.3 3 23 499 519 497 519 0.98 18 24 1.4 70 3.9 1.2 1 23 526 549 526 549 0.92 19 24 0.00038 0.019 15.1 2.5 3 23 556 577 554 577 0.94 20 24 0.0011 0.054 13.7 0.3 2 23 585 607 584 607 0.93 21 24 2.3e-05 0.0011 19.0 0.8 3 23 614 634 612 634 0.96 22 24 8.7e-08 4.4e-06 26.6 0.7 1 23 640 662 640 662 0.98 23 24 3.2e-05 0.0016 18.5 0.3 3 23 670 691 669 691 0.96 24 24 8.2e-06 0.00042 20.4 1.4 1 23 697 719 697 719 0.98
Sequence Information
- Coding Sequence
- ATGAGGACCCATAGTGGAGAGAAACCCTTCAGTTGCAGCTTCTGTGAGAAGAAATTCCCCGCTAAAACCAGCCTAAAATGCCCTGGAGGGTGCACACACACTAAGGAGAAGCCTTTGTGCAAACTTTGCGACAAAAGATTCCATGAAGATAAACTTGATGACTCTGTTATCGATGTTTCCACTTTGAAACGGTACAATCCCGGGATGAAGACGTGCCAAACGTGCAGAGAACAGTTTGTTACGAATGCACAGCTGAAGAAACATCACCGACAAGTTCACATGAGCAAAACCTACCCCTGTTCACTTTGTGGTAAACTCTTCCGCGAGCGCTATCAGCTCAAGGCCCACAGTTTGAAACACACAAAAGAACGACTGCACCATTGCAAGTTGTGCAACAGACGCTACAAGCACCTCTATTACTTCAAGAGCCACATGAGGAGCCACGACCATCCCGAAATCCAATACATCTGTCCGATTTGTGGGAAAATTTATGACCACCTGTCAAAATCGGCCTTCGATATGCACGTCAAAAAGCACAGCGTGACCAGAGTGGCGTGTGATGTCTGCAACAACACTTTCATGTCGCAATCGTATTTGAACAAACACAAACAGACCCAACATGGCGAACCTTTGCAGCACAGCTCTCTACCTTGCCATCTGTGTGAAAAGACATTTACCACGAAAGGGGGTGTTAAGCAGCACGTCGATCGGCATCATCAGGGTAAGAAGCACTTGTGCGAAACGTGCGGGAAAGCTGTCGCAACCGCTGAGAGTTTGCTAGTGCACATGAGGGTGCACACCGGGGAAAAACCCTTCGATTGCATCTACTGCAAGAAGAAGTTTTCGGACAAAAAGTATTTGAAGTTACATTTGAGAGTGCATACTAAAGAGAAGCCATACTTGTGTAAATTTTGTGATAAGAGATATTCTCAGTGTGGGACTTTGACGCTGCATGTTCGAGCAGCCCATAGTGGGGAGAGGCCTTTTTCGTGTAACATTTGCCCCAAGAGCTTCATCACAAAGACTCTTCTCAAAACTCATTTAAAAACTCATTCCATCGAAGTTAAATTAGTCGAGGATCttatcaaaatagaaaaagaggAGATAGAATCAGACACCGATGCGAGACACATTGAGCAAGTTTGGTGCAGGAAATGTCACGCGTCATTCGCTACAAAAAACATATTGCGTCAGCACCGTCGCAAAGTGCACAAAGCGAATCGTTTCACTTGTGATGTGTGTGGTAAAAAGTTCAGCGAGAAATATCAGCTCTCGTATCATAGTAAAGTGCATGCCgaagagaaattttttaagtgtCAAGTTTGTGAACGCGCCTTCAAATCGTATTACGCTTTAGCTCACCATAAGCGGAGTCACAACAGTAAGTCCCCAACCAGAGGGCTGACTTGTCAAGATTGCGGCAAAACTTTCAAACTTACGTCAGAATCGGCCTATTACACCCACCGCAAGAAACACTCTGGGGTGCAGTTCGGTTGCGATGTTTGCAACAAAAGTTTCGTTCAAGAGAAGCAGTTACTCAAGCACAAGAAAACACACGATGATAACAGAGTCACTTTTACTTGCATCTTTTGCGAAAAAACTTTCCTGACTGTGCATGGTTTGAAGGAACATGTTCAGAGTATCCACGAAGGGAAACGCCATCTGTGCGAAGCTTGCGGCAAGTATTTTAACACGCTTTCAAATTTGAGTAAGCATAAGAAGTCGCTGCATAATGGTGAAACAATCAAACTTTCGTGTCAGTGGTGCGAAAAAACGTTCACGATACTGAAGAGTTTGCGCAAGCATGTCGATATTGTGCACAAAGGGAAGCGACATCTGTGTGAAACTTGCGGCAAGGCTGTTACTTCTGCCAACAGTTTGAAAAATCACATGAAGGTTCATGCAGGAGAGAAGTCTTTCAGTTGCGACTACTGTGGGAAGAGTTTCACGGTGAAAGAAACTTTACGTGTGCATTTAAGGGTGCACACGAAAGAGAAGCCGCATGGGTGCGAGTTTTGCGATAAAAAGTTCTCCCAGAAGGGTTCGCTGACGTTGCATGTTAGGGCTGCGCACAGCGGAGAGAGACCTTACTCCTGCGACGTTTGTTCGAGGAGTTTTATCAGCAAGACTTTACTCAAAAGCCATCTGAAATCGCATTCCACTTGTTAA
- Protein Sequence
- MRTHSGEKPFSCSFCEKKFPAKTSLKCPGGCTHTKEKPLCKLCDKRFHEDKLDDSVIDVSTLKRYNPGMKTCQTCREQFVTNAQLKKHHRQVHMSKTYPCSLCGKLFRERYQLKAHSLKHTKERLHHCKLCNRRYKHLYYFKSHMRSHDHPEIQYICPICGKIYDHLSKSAFDMHVKKHSVTRVACDVCNNTFMSQSYLNKHKQTQHGEPLQHSSLPCHLCEKTFTTKGGVKQHVDRHHQGKKHLCETCGKAVATAESLLVHMRVHTGEKPFDCIYCKKKFSDKKYLKLHLRVHTKEKPYLCKFCDKRYSQCGTLTLHVRAAHSGERPFSCNICPKSFITKTLLKTHLKTHSIEVKLVEDLIKIEKEEIESDTDARHIEQVWCRKCHASFATKNILRQHRRKVHKANRFTCDVCGKKFSEKYQLSYHSKVHAEEKFFKCQVCERAFKSYYALAHHKRSHNSKSPTRGLTCQDCGKTFKLTSESAYYTHRKKHSGVQFGCDVCNKSFVQEKQLLKHKKTHDDNRVTFTCIFCEKTFLTVHGLKEHVQSIHEGKRHLCEACGKYFNTLSNLSKHKKSLHNGETIKLSCQWCEKTFTILKSLRKHVDIVHKGKRHLCETCGKAVTSANSLKNHMKVHAGEKSFSCDYCGKSFTVKETLRVHLRVHTKEKPHGCEFCDKKFSQKGSLTLHVRAAHSGERPYSCDVCSRSFISKTLLKSHLKSHSTC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -