Basic Information

Insect: Asbolus verrucosus
Gene Symbol: -
Assembly: GCA_004193795.1
Location: QDEB01120368.1:1045-6431[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 20 0.011 0.58 10.5 0.4 2 20 245 263 244 265 0.93

2 20 0.011 0.56 10.5 0.7 2 23 273 294 272 294 0.95

3 20 4.3e-07 2.2e-05 24.4 0.5 3 23 302 322 300 322 0.98

4 20 9.8e-06 0.0005 20.1 0.1 1 23 328 350 328 350 0.99

5 20 6.5e-06 0.00033 20.7 0.7 1 23 356 378 356 378 0.94

6 20 5.1e-08 2.6e-06 27.3 3.7 1 23 384 407 384 407 0.97

7 20 8.6e-05 0.0044 17.1 0.3 1 20 413 432 413 435 0.92

8 20 6.1e-06 0.00031 20.8 1.4 1 23 441 463 441 463 0.98

9 20 0.00082 0.041 14.1 5.8 1 23 474 496 474 496 0.99

10 20 1.8e-05 0.00089 19.3 0.4 1 20 500 519 500 521 0.96

11 20 7.4e-06 0.00038 20.5 5.1 1 23 698 720 698 720 0.99

12 20 4.7e-06 0.00024 21.1 1.5 1 23 726 748 726 748 0.96

13 20 3.4e-05 0.0017 18.4 0.1 1 23 779 801 779 801 0.97

14 20 5.5e-06 0.00028 20.9 2.4 2 23 809 830 808 830 0.97

15 20 1.4e-06 7e-05 22.8 0.7 1 23 836 858 836 858 0.97

16 20 7.1e-06 0.00036 20.6 0.9 1 23 864 886 864 886 0.98

17 20 2.3e-05 0.0012 18.9 0.7 1 23 892 914 892 914 0.95

18 20 0.00026 0.013 15.7 0.7 3 23 922 942 920 942 0.96

19 20 6.9e-07 3.5e-05 23.7 2.0 1 23 948 970 948 970 0.98

20 20 3.9 2e+02 2.5 0.8 1 11 976 986 976 986 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	20	0.011	0.58	10.5	0.4	2	20	245	263	244	265	0.93
2	20	0.011	0.56	10.5	0.7	2	23	273	294	272	294	0.95
3	20	4.3e-07	2.2e-05	24.4	0.5	3	23	302	322	300	322	0.98
4	20	9.8e-06	0.0005	20.1	0.1	1	23	328	350	328	350	0.99
5	20	6.5e-06	0.00033	20.7	0.7	1	23	356	378	356	378	0.94
6	20	5.1e-08	2.6e-06	27.3	3.7	1	23	384	407	384	407	0.97
7	20	8.6e-05	0.0044	17.1	0.3	1	20	413	432	413	435	0.92
8	20	6.1e-06	0.00031	20.8	1.4	1	23	441	463	441	463	0.98
9	20	0.00082	0.041	14.1	5.8	1	23	474	496	474	496	0.99
10	20	1.8e-05	0.00089	19.3	0.4	1	20	500	519	500	521	0.96
11	20	7.4e-06	0.00038	20.5	5.1	1	23	698	720	698	720	0.99
12	20	4.7e-06	0.00024	21.1	1.5	1	23	726	748	726	748	0.96
13	20	3.4e-05	0.0017	18.4	0.1	1	23	779	801	779	801	0.97
14	20	5.5e-06	0.00028	20.9	2.4	2	23	809	830	808	830	0.97
15	20	1.4e-06	7e-05	22.8	0.7	1	23	836	858	836	858	0.97
16	20	7.1e-06	0.00036	20.6	0.9	1	23	864	886	864	886	0.98
17	20	2.3e-05	0.0012	18.9	0.7	1	23	892	914	892	914	0.95
18	20	0.00026	0.013	15.7	0.7	3	23	922	942	920	942	0.96
19	20	6.9e-07	3.5e-05	23.7	2.0	1	23	948	970	948	970	0.98
20	20	3.9	2e+02	2.5	0.8	1	11	976	986	976	986	0.93

Sequence Information

Coding Sequence: ATGTCGAAGATGAAGGTTAGGACgcggaaaattaatttgaataaagtcTGCAGAGCTTGTCTCAGCGAACGCGGGCATCTGAGAGAAATATTCTCGACGAAACTACCCAAAATGATGGAGAGTTGTGCTGTGATCCAGGTTTCTGATAAAGATGACCTTCCCCCCCATGTCTGTGTTACGTGTTTCCACTTGATCGccaaattttacactttcaaGAAGAAAATGGAAAGAAGCGATCGGATATTACGAAGCTACACCAAACAGAGcaaagttaaacaaaaaaatattctggaTATCGCAATCAGCGAGGCGCAGATTGAACAGTCAAACAATGATGACCTTGGAGAGGTCAGTGAAGAAGACATCCCGCTAAGTAAAAGACAAGTTAAGAAAAACTCGCGCCTCCTGAGGAGGAGCAAAGTGAAAGCCAACAAAATAATCGATGACATCCTCAAAGATGATAAAGACAATAATTCGGAGATAAGCGAGGATAATTCCGaaacaattatcaaaatgGAGCAGGaaattaaatgtgattttCAACCGCAAGAGTACCCAGATGGCCCCCCACCTCTGGTTCCCCTAGAACCTGCCAAGAAAATTGACAATAACGAGAGTTTGATTGTGAAAACTTTACCAAAAGACCCACCGCCGTTGATCCCCATAAAACCGCTGGTGGTCCCCGATAatgttttgacgaacgtaaTAGAGAACCccattgaaataaatttgcaatgcACCACCTGCAGCCAGCAATTTAATTCGCTATCGGCGCTTAAAGACCACAAATTAAACAGCTGCAAGGAAAACATTCTGATGTGCAACATCTGCCGGAAAGAATTCAAAGAGAGGAAGCGGCTAATCGGCCACTTGAAGGGCCACATGGTAGTCAAAGACTACGGATGCAAAATATGCGGGAAGCGCTACCCCAATCCGAGCACTTTCCGCGTCCACATGAGGACTCACACGGGCGAGAGGCCCTTCAAGTGTCAGATTTGCAACAAAGGATTCGTCCGGTGGGCAGGCGTGGTGGGCCATATGAGAACCCACCAGTCCCACAAACCCTACAAATGTGACACTTGCGGCAAGGGCTTCAAGATTTCTTCCAATCTCGAACGCCACAAAGTGCTGCATTCCGAGAGCTTGCCCTTCTGTTGCAGTTACTGCGGCAAGACGTTCAGCCAGTCGGATAATCTGCAATTACACATTCGCACTTACCACACGAACGAGAGGCCGTATCTGTGCAATGAATGCGGGAAGGGATTTGTCAGCTCCACCAGACTGAACAGACATATGTGGGTGCATACTGGATATAAGCCCTATCGCTGTAAGACGTGTCCGAAGGCCTATTCCAACTCGaacgatttaaaaaaccaCGAAAGGAACCATTCTGGGAATATTAGCGACGAAGATAAACCTTATGTCTGCAAAATTTGCGAAATGAGGTTTTATCACCCGTGTAGGCTGAGCAAGCACATGAAAACCCACGAAAGGCCGTATTCGTGCTCCATTTGCTTCAAGAGCTTCAGCACGAACGCTCTCTTAAACAAACACCTGACTGGAAAGAAGAGTATGCATTATGTCCAGGTCGAAGAGGTGCAACATGATAACGGAGAAGTTTCGACGAATATTTGCCGTGCATGTTTGACCGAGACAGGAGACTTCCAGTCGATATTCGTCCCGGCCGAGGAAACGGGCCTCTCGATACACATTTCAGAAATGATAATGGCATTCGCCTCCGTGCAAATAACCTTCGGGGACGGTTTACCAGAACGGATTTGTTCAACTTGCGCCAAAGACACCGTCAAGATGTATTTATTCAAGCTGAAATGCGAGGAGTCGGATAAAATCCTGCGGAACCGACTGGGCAAGAGCCCCCTAGAACAGCAGTATTCCGTGGAAGAAAAGCACTCGGCTGAACGCGACGAAGATGAGGACGCCTACGACATCGTCATCAAGCCCGAAATAAATTCAGAGGATTCCCAAATGAACCAGGACGTGAGTGATGATTTCGACAGTTTCAATGCCGAAGACAAAAGTGATAATGAAATAGACCCTTCTGATTTATTGGATGatgtaacagaaaaagaatttaaatgtcCGCATTGttccaaattatttagtaGACGCACCACATTGAACCGTCACGTCAAAACTCATTCAGCCATCAAAGCGTATAAATGTGATACATGTAATAAGAGATTCTCTCGGAACGACCTACTATTAAGACACAAAATAGCACACGCCATGAAAATGGACGAGCAAAAGTTCGATTTTGACGATTTCAGCGAGGACATCGACGACACAATCATCATCAAAACAGAGACAGCCTTGTATCCGTGCACAGATTGTaacgtaatttttatcaagaaaGACGAACTGGAGTCGCATATGCAAGATCACGTCAAAAGCATAGGGGGGATAGTTTGTAaagtatgtttaaaaaagttcagTAAACAAGCACACCTCAACAGacacatgaaaatacattcTCAGAATAAGCCGCACGTATGTCAGATCTGTAAGAAGGGCTTCGTCAGGGCCGAGCAACTCAACAATCACATGAACGTGCATTCGGGGATCAAGCTCCATGTCTGTGCTATTTGTCTCAAAGGCTTCAACCAAATATCGAACTTGAAAGACCACATGCGCACGCACAGCGGCGAGAAGCCCTTTCTGTGCTCCACCTGCGGCAAGGGCTTCAATCAGTTGGGAAACCTCCGGCAGCACACCATCCGGCACAGCGGCATCAAGGCGCATTTGTGCAGCACGTGCGGCAACGGGTTCGCGAGCAAGGGCGAGCTGTCGGCGCACCTTCGCAAGCACACAGGAGCGCGCCCCTTCGTGTGCCCCATTTGCAATCACGGTTTCACCACTTCGAGCTCGTTGACCAAGCACAAGAGGATCCATTCGGGGGAGAAGCCGTACGAGTGCGACGTCTGCAAGATGAAGTTCTCT
Protein Sequence: MSKMKVRTRKINLNKVCRACLSERGHLREIFSTKLPKMMESCAVIQVSDKDDLPPHVCVTCFHLIAKFYTFKKKMERSDRILRSYTKQSKVKQKNILDIAISEAQIEQSNNDDLGEVSEEDIPLSKRQVKKNSRLLRRSKVKANKIIDDILKDDKDNNSEISEDNSETIIKMEQEIKCDFQPQEYPDGPPPLVPLEPAKKIDNNESLIVKTLPKDPPPLIPIKPLVVPDNVLTNVIENPIEINLQCTTCSQQFNSLSALKDHKLNSCKENILMCNICRKEFKERKRLIGHLKGHMVVKDYGCKICGKRYPNPSTFRVHMRTHTGERPFKCQICNKGFVRWAGVVGHMRTHQSHKPYKCDTCGKGFKISSNLERHKVLHSESLPFCCSYCGKTFSQSDNLQLHIRTYHTNERPYLCNECGKGFVSSTRLNRHMWVHTGYKPYRCKTCPKAYSNSNDLKNHERNHSGNISDEDKPYVCKICEMRFYHPCRLSKHMKTHERPYSCSICFKSFSTNALLNKHLTGKKSMHYVQVEEVQHDNGEVSTNICRACLTETGDFQSIFVPAEETGLSIHISEMIMAFASVQITFGDGLPERICSTCAKDTVKMYLFKLKCEESDKILRNRLGKSPLEQQYSVEEKHSAERDEDEDAYDIVIKPEINSEDSQMNQDVSDDFDSFNAEDKSDNEIDPSDLLDDVTEKEFKCPHCSKLFSRRTTLNRHVKTHSAIKAYKCDTCNKRFSRNDLLLRHKIAHAMKMDEQKFDFDDFSEDIDDTIIIKTETALYPCTDCNVIFIKKDELESHMQDHVKSIGGIVCKVCLKKFSKQAHLNRHMKIHSQNKPHVCQICKKGFVRAEQLNNHMNVHSGIKLHVCAICLKGFNQISNLKDHMRTHSGEKPFLCSTCGKGFNQLGNLRQHTIRHSGIKAHLCSTCGNGFASKGELSAHLRKHTGARPFVCPICNHGFTTSSSLTKHKRIHSGEKPYECDVCKMKFS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -