Aver011002.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Asbolus verrucosus
Gene Symbol
-
Assembly
GCA_004193795.1
Location
QDEB01101125.1:8095-11377[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 20 2.7e-07 1.4e-05 25.0 1.3 1 23 138 160 138 160 0.98
2 20 7.7e-07 3.9e-05 23.6 3.3 1 23 165 187 165 187 0.98
3 20 5.9e-06 0.0003 20.8 1.0 1 23 193 215 193 215 0.99
4 20 2.6e-05 0.0013 18.8 2.1 1 23 221 244 221 244 0.98
5 20 6.9e-07 3.5e-05 23.7 0.5 1 23 250 272 250 272 0.98
6 20 0.00012 0.0059 16.7 0.3 1 23 278 301 278 301 0.96
7 20 1.3e-05 0.00067 19.7 0.2 1 23 307 329 307 329 0.98
8 20 3.7e-05 0.0019 18.3 4.2 1 23 338 361 338 361 0.97
9 20 3.6e-06 0.00018 21.5 1.3 1 23 367 389 367 389 0.98
10 20 0.0005 0.025 14.7 2.8 2 23 563 584 562 584 0.97
11 20 7.7e-05 0.0039 17.3 3.1 1 23 590 612 590 612 0.98
12 20 2.5e-06 0.00013 22.0 1.7 1 23 618 640 618 640 0.99
13 20 0.00017 0.0088 16.2 1.4 1 23 646 668 646 668 0.95
14 20 0.0097 0.49 10.7 1.7 1 23 675 697 675 697 0.98
15 20 0.00033 0.017 15.3 0.7 1 20 703 722 703 726 0.91
16 20 0.00022 0.011 15.9 5.8 1 23 732 755 732 755 0.95
17 20 0.00018 0.0094 16.1 0.2 2 23 765 786 765 786 0.97
18 20 1.1e-05 0.00057 19.9 0.7 1 23 792 814 792 814 0.98
19 20 1.1e-05 0.00057 19.9 1.1 1 23 820 842 820 842 0.95
20 20 1.7e-07 8.8e-06 25.6 0.7 1 23 848 870 848 870 0.99

Sequence Information

Coding Sequence
atgGAGCCTTTTCCCAACTATGAACATATAAATATTAGCGAAGTTTGCCGAATATGTTTACTGAAAAAGGACGAGATGAGgttaattactgaaaatggTTTAGATAGTTTATTATTCGAATGTACTTCACTCAAGaTTTTAGAGGATCATAGTCCGCACCTTGTGTGCAGTCAGTGCGAAAGTGACATCAACAAATGGTACCTCTTCAAACAAAAAGTCCTGAAATCCATTGAAATTGGGAAGTGGTTAACTAAGCAGAAGTTGAGTGAAGACACACCTGAATTAATCGAAACTTGCCAAACTATAGGAATATTAAATAGCGATCACTTTGAAGATATACTAACagacaataatttacaatcagtagatgatataaaatatttacagctaCAAGACCAAATCTGCAAGGATTTTATTTGTGAGCAATGTGGTAAACAGTTCACGTCTCAAACTGccttgaaaaaacatttaagatCCCACATGCCAAAAAGTCATGAGTGTTCAAAATGCGGCAAAGTCTTCAAACAGTCACAGACTCTAAGCGACCACATGAGGCGCCATTATGACAACAGAAACTACACCTGTGAGTTGTGTGGTAAAAGGTTTTACAAACAGTTCAATGTGGTGGAGCACATGCGAATCCACACGGGTGAAAGACCCTTCAAGTGTGAATACTGCGAAAAGACCTTCACCAGAGGGTTGTTGCTGCGGAATCACATCAAGAAAACGCACACGGGCGAGAAGCGGTTCGTCTGCGAAACTTGCACTAAATCGTTCGTGGACGCCTACCAGCTAAAAATCCACGTGAGAACCCACACGGGCGAAAAACCGTTCTCTTGCACGGAATGCCCCATGTCGTTCGCAATGCCCGGCCAACTCAAATCGCACGTGAAATACAAACACACGAAACAGAAAGACTTTGTTTGCAACATCTGCGCCAGAGCTTTCACGGCCAAATACACGCTCGAAGAGCACATCCGCACCCATACCGGAGAGAAAAAGGAGCCCAGACACGAGTGCACAATGTGCGGGAAGAAGTGCATCACCACGTCGCAGCTGAAGATACACATCCGGAGCCAGCACACAGGAGAGAGGCCCTTCTCTTGCAACATTTGCATGAAAAGTTTTGTGACCAAAACCAGCTTGGAGTCGCACATTAGGACACACACCGGCGAAAAAAAGTACATCGAAGAAGTCTGCAGGATTTGCCTGACGAAAAAGGATCAGATGAACCTGATCTACGAGGCCGGGTTAGCGGACATGCTGTTGGAGTGCGCTTCTGTTCAAGTCACCCCGGAAAACGGACTGTTTAATTTAGTCTGCAACCAGTGCCAGAACGAGGTTAGTCGATGGTACGTGTTCAAACAGCAAGTTGTCCGCTCCTTCGAGATCGGCAAGTGGTTGCTGGATAGAAAATTGAAGAACTCGTCGAATAATCTCACCACTCTAACAACATTGGATTCGGCGAAAATCCAAAATGAGAACGTGGAAACCCAAAAGAATCTCGAGAATTATGGGACGGATGATTCCATCATTGAGAACGTGGAGACCTTAAAAAGTCTCTTAGATGAACATGAGAATGCTGTCAAGGCTGTGAGTGATGCAGAAAATTCCGTAAATGTCTCGGTTTTTGGATTTGATGAAGAAAAAGGGGtcccaaaaaagaagaaagcgTCGGAGAATTTGGTGTGTCAAATATGCAACAAGCAGTGCACCTCGACCAATGCGTATAACCGGCATATCAAAACCCACGACGATTCGAGACCTTATGTTTGTTGCAAATGCGATAAGCCCTTCAAAACTTCGCAAGTTTTATCTGAACACATGAAGAGGCATTACGACGATAGAAGATACCAGTGTGAGCTGTGCAGTCGCAAATTTTACTCGAAAGCTAGTTTAAACGACCACATGAGAAGCCACACGGGAGAAAGGCCCTTCAAATGCGACGTTTGCGGAAGGTGCTTCAGCACCAAGGCGATACTTCGGCAGCATTCGGCAGTTCATACGGTGAGAGAGAAGAAGCACCAATGTAAAATCTGCAGTAAATTTTTGCTGACGGCCGGAAGCCTGGAGACCCACATAAAAAAACACTCCGGGGTCAAGCCGTTTTCTTGCTCGGGTTGTGACAAGCGCTTCTTCACCAAAGAGGCCATGCAGCGCCATTTCGGGGCGATTCACGACACGGACAACAACTTCTTGTGCAGTGTTTGTTCGAAAGTGTGTTCGACCAAGGTCCACCTCAACAACCACATGAAGAAGAAACATTTGGGCTTGGGGAGGCCCTCGAACGCCGTCTGTTCGGAGTGCGGGAAGCAGTGCGGTTCCGCGGCCGAGCTGAAGGTGCACGTGAGGGTCCACACGGGGGAGAGGCCGTACGTTTGTGACATTTGCAATAAGAGGTTCATCGCCAAGGGCAATCTGAACTCGCACAAGCAGAGGCACAGCGGGAAGAAGCCGTTCTTGTGCAACCATTGCGGGAAGGCTTTCGGCGAGAAGTCCACGCTGAAGGTGCACGAGAGGATACACACGGGGGAGCATCCGTACAAGTGCAACGTCTGCGAGAAGGCGTACGTGCAGAGCAGCGCGTTGAGGACGCACATGAAGACGCATTGGAAGCAGTAG
Protein Sequence
MEPFPNYEHINISEVCRICLLKKDEMRLITENGLDSLLFECTSLKILEDHSPHLVCSQCESDINKWYLFKQKVLKSIEIGKWLTKQKLSEDTPELIETCQTIGILNSDHFEDILTDNNLQSVDDIKYLQLQDQICKDFICEQCGKQFTSQTALKKHLRSHMPKSHECSKCGKVFKQSQTLSDHMRRHYDNRNYTCELCGKRFYKQFNVVEHMRIHTGERPFKCEYCEKTFTRGLLLRNHIKKTHTGEKRFVCETCTKSFVDAYQLKIHVRTHTGEKPFSCTECPMSFAMPGQLKSHVKYKHTKQKDFVCNICARAFTAKYTLEEHIRTHTGEKKEPRHECTMCGKKCITTSQLKIHIRSQHTGERPFSCNICMKSFVTKTSLESHIRTHTGEKKYIEEVCRICLTKKDQMNLIYEAGLADMLLECASVQVTPENGLFNLVCNQCQNEVSRWYVFKQQVVRSFEIGKWLLDRKLKNSSNNLTTLTTLDSAKIQNENVETQKNLENYGTDDSIIENVETLKSLLDEHENAVKAVSDAENSVNVSVFGFDEEKGVPKKKKASENLVCQICNKQCTSTNAYNRHIKTHDDSRPYVCCKCDKPFKTSQVLSEHMKRHYDDRRYQCELCSRKFYSKASLNDHMRSHTGERPFKCDVCGRCFSTKAILRQHSAVHTVREKKHQCKICSKFLLTAGSLETHIKKHSGVKPFSCSGCDKRFFTKEAMQRHFGAIHDTDNNFLCSVCSKVCSTKVHLNNHMKKKHLGLGRPSNAVCSECGKQCGSAAELKVHVRVHTGERPYVCDICNKRFIAKGNLNSHKQRHSGKKPFLCNHCGKAFGEKSTLKVHERIHTGEHPYKCNVCEKAYVQSSALRTHMKTHWKQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-