Aver010362.1
Basic Information
- Insect
- Asbolus verrucosus
- Gene Symbol
- -
- Assembly
- GCA_004193795.1
- Location
- QDEB01095811.1:2734-6455[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 29 0.00013 0.0066 16.6 0.2 1 23 11 34 11 34 0.97 2 29 0.04 2 8.8 0.6 3 23 41 62 39 62 0.94 3 29 0.00019 0.0095 16.1 1.6 2 23 72 94 71 94 0.93 4 29 0.00066 0.034 14.4 0.9 3 23 101 121 99 121 0.95 5 29 1.3e-06 6.4e-05 22.9 0.7 1 23 127 149 127 149 0.98 6 29 0.031 1.6 9.1 0.8 1 23 155 178 155 178 0.92 7 29 3.7e-07 1.9e-05 24.6 0.3 1 23 184 206 184 206 0.98 8 29 4.4 2.2e+02 2.3 0.2 7 23 221 237 221 237 0.96 9 29 0.21 11 6.5 5.3 1 21 243 263 243 265 0.94 10 29 0.027 1.4 9.3 1.2 2 23 275 298 274 298 0.70 11 29 3.3e-06 0.00017 21.6 4.1 1 23 303 325 303 325 0.98 12 29 0.0037 0.19 12.0 0.0 2 23 332 354 331 354 0.90 13 29 4.1e-05 0.0021 18.2 1.9 3 23 361 382 359 382 0.95 14 29 4.5e-05 0.0023 18.0 0.1 2 23 392 414 391 414 0.95 15 29 7e-05 0.0035 17.4 0.1 3 23 421 441 419 441 0.96 16 29 0.00012 0.006 16.7 1.3 1 23 447 469 447 469 0.97 17 29 0.00021 0.011 15.9 1.2 1 23 475 498 475 498 0.94 18 29 0.00014 0.0072 16.5 2.0 1 23 504 526 504 526 0.97 19 29 0.76 39 4.7 0.0 5 23 530 548 529 548 0.87 20 29 0.084 4.3 7.7 2.8 3 20 587 604 586 608 0.93 21 29 0.00021 0.011 15.9 0.9 2 23 615 637 614 637 0.95 22 29 0.00015 0.0075 16.4 0.6 1 23 642 664 642 664 0.95 23 29 4.9e-06 0.00025 21.1 0.2 1 23 670 692 670 692 0.98 24 29 0.006 0.31 11.3 2.4 1 23 698 721 698 721 0.97 25 29 0.0034 0.17 12.1 3.5 3 23 729 749 727 749 0.97 26 29 5.6e-05 0.0028 17.7 0.9 1 23 764 786 764 786 0.95 27 29 4.8e-07 2.4e-05 24.2 1.4 1 23 792 814 792 814 0.98 28 29 1.1e-05 0.00053 20.0 1.7 1 23 820 843 820 843 0.94 29 29 0.001 0.053 13.7 1.4 3 23 851 871 849 871 0.97
Sequence Information
- Coding Sequence
- ATGAAGTTGCACGATGCAGATAAACCTGTTTTCCCCTGCGCCTTGTGTCGGAAGATCTTCGCGTCTGCGAAGAGCCTGCAGAAGCATACCGAAACGATCCACGAAGGCAAGCGCCATCTGTGTGAAGCTTGCGGCGGATCGTTCAGGTCTGTCGCGAATTTGGACATTCACAAGAAGACGAAGCACGATGCCAATTACAAACCGGTGGAGCTTCCCTGCAAGCTTTGCGATAAAACTTGTTTCTCGTCGAGGAATTTGAGGAGACACGTGGAGATTGTGCATGAGGGTAAAAGGCATTTGTGCGCGACCTGCGGCAAGGCTGTCACTTCCATGCGCAGCCTGAAGGACCACATGAAAGTGCACGCTGGAGAGAAACCGTTCGTTTGTGACTATTGCGACAAGTCTTTCACAGCCAGAAATACTCTCCGTGTTCATCTAAGAGTGCACACTAAAGAGAAACCGCACGCTTGCGCTTTTTGCGACAAGAAGTATACGCAGAAAGGCCCTTTGACGTTTCACATCAGAGCTGTGCACAGCGGGGAGAAACCTTACGAGTGTGAAATTTGCCCCAAGCGTTTTGTCAGCAAGAGCTCGCTCAACGCCCATTTGACGTCGCATGgcaacaaaattTTGAAGAAGGCGAAGTTGAGCGAAATTCCAGACAAAACTTACAAAGACAAGAACAGGCTCGATATTCACCGGAAGGTTCATTTCGAAGAGAAATCTTATCATTGTGATGTTTGTGATGAGCGCTATCGTTCCTACTGGACGTTTGTTCGTCACAAAAGATGCCACATGAAGGATAGCCCAGCGAACGCTTTGAGTTGCCCCGACTGTGGGAAAGTTTACAAATACTCAGCTCTCTCGAACTACTACATCCACCGCCAGACGCACAGCTCGAAAAAATTCGAGTGCGATATCTGCCACAAAACTTTCAAGCAGCAGGGGAGCTTGAGTACCCACAGAAAGCGCCACAACGAAAACCTCTCTCTACCTTGCAACCTATGCGAAAGAATATTCACCTCCGTATCGGGTTTGAAGGTCCACGTCGAAGCCATCCACCAAGGCATACGCCATCTGTGCGAGATCTGTGGTAAAGCGTTCAAGTCGGAATCAACACTGTGGCTGCACAAGAAAAAGAAGCACGATTCTAACTACAAGTCCAAACTGGTTTCTTGCTCTGCTTGCGGGAAAGTTTTTCGCGAAGCGAAGAACCTGCGCGAGCACGTGAGAGTGGTGCACGAGGGCAAGCGCCATCTGTGCGCGATTTGCGGGAAAGCCGTTACGACAGTCGGCAGTTTGCAGGATCACATGCGGATTCACACAGGGGAGAAACCTTACGCCTGCGATCATTGCGGCAAGAGGTTCGCGAAGCGACAAGTGTTGCAGTTGCATCAAACGGTTCACACGAAAGAGAGGCCTCACGCTTGTAAACTCTGTGGGAATAAATACTCCCAACGCGGCACGCTGTCGCGTCATATGAAGGCTGCACACAGTGAAGAAAGACCTTTCGCGTGCAGTATTTGCTCGAAACGTTGCGTGAGCAAGACTCTGCTCAACGCTCATCTGAAATCGCATTCTAATAACGTTTGTGGCGAAAAATTCGCCACGTATTTTGAGCTCGTTTACCACAAGGGGGCGCACAGTGCAGACATCATCCCGACCTGTGAAGACTGCGACGACGTTCATCGATTCGCTTCGATGACCGAGTATCAAGAACATTGCAAACACCACGATTTAGAGAGAAGGAAGGTCGCTTGCGACATCTGCCATCAAGTTTTAGGCAACAAATATAACCTAAAAGTGCACAAGCAGTGCAAGCATTACACCCCTCCGAGTGTTCCTTGCTCGATGTGCCATAAAGTGTTCAAGTCCAAAAGCGCCCAAAAGTTGCACGTGAAGGTCGCGCACGAGAATAGCATCTTTCTGTGCGAGGTCTGTGGGAAATCCGTCAAATCTGGAACAAGCCTGAGACAGCACATGTTCACTCACACGGGCGAGAAGCCCTTCACTTGCGAGCTTTGCGGGAAGAATTTTGCCGGAAGGGAGTTGCTGAAGCTTCACATAAGGGTGCACACGAAGGAAAAGCCGCACGTTTGCCAAACTTGTGGCAACAAATACTCGCAAAGGTCCACCCTATCATTCCACATAAGGACTGCACATAGCAATGAAAGGCCATTCGGTTGTCACATCTGTCATAAGCGTTTCATAGCGAGGACTTTGCTCAACTCACATCTGAAGGGTCATTCAATGAAATTGCACGTGAAGAGATCGCATGAgtacaatattttcttgtgCGAAGTTTGTGGGAAGACAGTGTCGTCTTCTTTGAGCTTAAAACACCACATGAGCGTCCATACTGGAGAGAAACCTTACTCTTGTGACCGCTGCGGGAAGAGTTTTACTAGGAGGCAGATGTTGCAGCTGCATTTGAGGGTCCACACGAAGGAGAAACCACACGCttgcaaaatttgtaataagagATATTCGCAGAGGTCAACTCTGACGCTCCACTTAAGAGCAGCGCATAGCAAAGAGAGGCCATTCGGGTGCCACATCTGCCCGAGACGTTTCATAGCGAAGACTTTGCTCAACACACACTTGAAGCTGCATGCCAAGAAATCTGTTTAA
- Protein Sequence
- MKLHDADKPVFPCALCRKIFASAKSLQKHTETIHEGKRHLCEACGGSFRSVANLDIHKKTKHDANYKPVELPCKLCDKTCFSSRNLRRHVEIVHEGKRHLCATCGKAVTSMRSLKDHMKVHAGEKPFVCDYCDKSFTARNTLRVHLRVHTKEKPHACAFCDKKYTQKGPLTFHIRAVHSGEKPYECEICPKRFVSKSSLNAHLTSHGNKILKKAKLSEIPDKTYKDKNRLDIHRKVHFEEKSYHCDVCDERYRSYWTFVRHKRCHMKDSPANALSCPDCGKVYKYSALSNYYIHRQTHSSKKFECDICHKTFKQQGSLSTHRKRHNENLSLPCNLCERIFTSVSGLKVHVEAIHQGIRHLCEICGKAFKSESTLWLHKKKKHDSNYKSKLVSCSACGKVFREAKNLREHVRVVHEGKRHLCAICGKAVTTVGSLQDHMRIHTGEKPYACDHCGKRFAKRQVLQLHQTVHTKERPHACKLCGNKYSQRGTLSRHMKAAHSEERPFACSICSKRCVSKTLLNAHLKSHSNNVCGEKFATYFELVYHKGAHSADIIPTCEDCDDVHRFASMTEYQEHCKHHDLERRKVACDICHQVLGNKYNLKVHKQCKHYTPPSVPCSMCHKVFKSKSAQKLHVKVAHENSIFLCEVCGKSVKSGTSLRQHMFTHTGEKPFTCELCGKNFAGRELLKLHIRVHTKEKPHVCQTCGNKYSQRSTLSFHIRTAHSNERPFGCHICHKRFIARTLLNSHLKGHSMKLHVKRSHEYNIFLCEVCGKTVSSSLSLKHHMSVHTGEKPYSCDRCGKSFTRRQMLQLHLRVHTKEKPHACKICNKRYSQRSTLTLHLRAAHSKERPFGCHICPRRFIAKTLLNTHLKLHAKKSV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -