Aver010539.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Asbolus verrucosus
Gene Symbol
-
Assembly
GCA_004193795.1
Location
QDEB01097319.1:25100-28804[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 26 3.8e-05 0.0019 18.3 4.5 1 23 146 168 146 168 0.97
2 26 0.00083 0.042 14.1 1.2 1 23 174 196 174 196 0.97
3 26 4.7e-06 0.00024 21.1 6.9 1 23 201 223 201 223 0.99
4 26 0.36 18 5.7 1.7 3 23 231 252 230 252 0.94
5 26 0.001 0.052 13.8 0.1 2 23 258 279 257 279 0.96
6 26 4.1e-05 0.0021 18.2 1.0 1 23 289 311 289 311 0.97
7 26 0.00012 0.0061 16.7 0.8 1 23 317 339 317 339 0.97
8 26 7.3e-06 0.00037 20.5 1.0 1 23 345 367 345 367 0.98
9 26 5.7e-07 2.9e-05 24.0 3.6 1 23 373 395 373 395 0.98
10 26 0.00019 0.0095 16.1 2.6 5 23 404 422 401 422 0.94
11 26 2.8e-05 0.0014 18.7 3.2 3 23 444 464 443 464 0.95
12 26 1.6e-05 0.00081 19.4 2.1 1 23 470 492 470 492 0.98
13 26 0.00071 0.036 14.3 2.4 1 23 498 520 498 520 0.99
14 26 0.00052 0.026 14.7 0.1 2 23 527 549 526 549 0.94
15 26 0.00032 0.016 15.4 0.6 1 23 554 576 554 576 0.96
16 26 0.048 2.4 8.5 5.0 1 23 585 608 585 608 0.91
17 26 0.0001 0.0053 16.9 0.4 1 23 615 637 615 637 0.97
18 26 9.7e-06 0.00049 20.1 0.2 2 23 644 665 643 665 0.97
19 26 4.6e-08 2.3e-06 27.4 0.8 1 23 671 693 671 693 0.98
20 26 2.5e-07 1.2e-05 25.2 0.3 2 23 751 772 750 772 0.96
21 26 0.00014 0.0073 16.5 0.4 1 23 778 801 778 801 0.94
22 26 0.14 7.1 7.0 0.4 1 23 812 835 812 835 0.95
23 26 4e-06 0.0002 21.4 1.1 3 23 843 863 842 863 0.95
24 26 1.9e-06 9.6e-05 22.4 1.5 1 23 869 891 869 891 0.96
25 26 1.1e-06 5.5e-05 23.1 1.2 1 23 896 918 896 918 0.98
26 26 2.4e-05 0.0012 18.9 0.2 1 23 924 946 924 946 0.96

Sequence Information

Coding Sequence
atgGTCCCAAGAAAGTTTGCCATTGGGTTTCTTTTCGCGTCAGTTGGTGGATTGGTGGGACACCGAAACCCAAAATTCTGCAACACACATTTCGAGTTGCGAAAACTttcgCTGTACCAGGACCACTTGTACTCGACCAGTTACACCGAAATCTCAAACTTGCAAACGAACAATTTGCATCTTCAGTGTAAATACTTGATGTCGATAGTGGACCCCAAACAGTCCGAAATAAACCCGGACAATATCCTGGAGGACCACCTCAACGAATCAGACGCGGATCTTTTGAACCTGCTCACAACCGAAGACGATTGCACCGACATTTTGAACAACATCGCGACGAACGAGCAGTTCGAGCGGCTGATGAGCAGCGAGACCAATTTCGTCGACGAGTTCATCGACGAGATGAAGAAGGAAACGCGGAAGGTTGAAAACACCTTCAAGTGCTTCCAGTGCAGCAAAGTATTCAAGACGAAGAAACTGCTGAAGAAGCATCTGTTCATTCACACCGGAGTGCGCAAATTTGCCTGCGACATCTGCTCCAAAACGTTCAAATATCGCTACGAAGTCGACGTTCACAAGAAAAGCCACAACAAACCGACATTCCAGTGCGACATCTGCTCGAAGATGTTCATTCACAAGTCGCACTTGACCACGCACAGGCGCAAACACCTCAACGAGTTCGTGGCGTTTTGCAAGGAGTGCAACATGGGATTCGTGACGCAGTTCCTCCACAAAACTCACATCAATCTCGTCCACAAGAATCTGCAGCTGGTCTGCGACGTTTGTGGCGCAAGACTGAGCTCTCTGTCTTCGCTGAAAGAACACAAACTGACCCACGATCCCAACTACGGCAAAGAGAGGTCGCACGTGTGCGAAATTTGCGGAAAGTCCTACTTAAATTCGAGGAATTTGAAAGGGCACATGAAAATCCACAAGCAGATGCGCCCCCACGTTTGCAACATCTGCGGCAAGTCGGTCAGCAGCAAAAAAATCCTAGAAACTCACATCAAAATGCATACGGGCCTCAAAGACTTCATCTGCAAAGTGTGCAATAAAGGGTTCGCTTCGAAGGAGTATTTGGAAGTACACCACAGGATCCACACCGGGAATAAACCATTCAGTTGCGAACTTTGCGGCAAAAGATTCACCCAGAAAACATCGCTGACGGTCCACATGAGACACCACACCGGCCAAAGGCCGTACAAGTGCGAATGCGGCAAAGAATTCACCACCAAGAGCCACCTGATGACGCACTATAAAGCCCATGATGTGGGGGGCGTGGATATTGATTATATTTCACGCCCCGAGAAAAAGAGTGAAGACAAGCATTGTCCGCATTGCCCAAAATCTTTCCCCAACAACAGAAAGCTGAAGCGCCACCTCATAGCCCACAGCGAGCAAAGACCGTACTCTTGCGACATCTGTTCCAAGAAGTTCAAGCGCAAATACGACATCACCGTCCACAAGCGCGTCCATGGGGGGATGCTGTCCTTCCAGTGCGACTTCTGCGAAAAGATCTTGAGGTCTAAAGGCTCCTTCATGACGCACCGGAGGCGCCACCTCAAGGACTACATCCAAGTGTGCAAAATTTGCGGCGCGGGTTTCGTCACCAACCAAGAATACAACAACCACATGGGTTCCAAACACGGCACCAGCGCCCACATTTGCGACATTTGCGGGAGGGGTTGCTACGATAAGGCCGCTTTGCAAGGCCACATGGCGAAGCACGCGAAGGATTACGAGAATAACAAGTACGAGTGCAACTTGTGCAACAAGACCTTCCTCCAGGAGAAGTACTTGAAGCACCATTTCTTCAGGATGCACAAGGATGGCGGGCAGAAGTTCATCTGTGATCTGTGCGGGAAGAGGCTCAATTCGAAGACGAGCCTGCGCGATCACTTGATTATGCATTCGGGGCTGAAGCCCATCGAGTGTAAAGAGTGTGGAAAAGGGTTCGCTTTAAGAACCACGCTGAAGGCGCACTTGAGGATCCACACGGGAGACAGACCTTATGTTTGCAACGATTGCGGCAAGGCTTTCACACAGAAAACTTCTCTTACCATTCACTTGAGGTACCACAGTGGGGAGAGACCCTATGTTTGTGATATTTGCCAAGTTGGCTTTATCGCCTATGCACCTACCAAGAGGGATAACCGTGaagaaaattaccaaaaattcgAGATTGATGTTAATGGGCAAAAAGAATTGACCGTTCATGACGTCAGGTGTGCCATTCCAAAAGCACCTCAAGTTTGCAAGTATTGTGACAAAGTTTTTGCGAATTCGTCCAATCTCAAAGCTCACGTAGCCAGACATGAGGAGATACCGGAGCACGCCTGCCCAAAGTGCGGCAAAACTTTCTCCAACGCCATATCCAAAGAGGTGCACTTGGAAATGATGCACACGGAGCATTTCGACGCGACCTTGGACGGTTTTGTGTGTAAGATGTGCGATGCGACAGCCGCCACTAAAACGCTCATCCTCAGACATTTTAACTCGAAACATCGACAGGTGATTCCGACTCTGTGCGACGTTTGCGGCAAATGTTTCAGCACTCCTAAACAACTCAAACGTCACGCCGTGGTGCACTTCCATGACAAACCTCACGCGTGTCAGACCTGCGGGAAGAGTTTCAAAAACAGAGACGCCTTGAACGGACACATGTCCACCCATGACGACTTCAAGTACGTCTGCGAGGAGTGCGGGAAAGAGTTCAAGAAGCAGTTCAGCTTGCAGGAGCACCTGAAGAAGCACGCCGGCGAGTTTATGTTCTTGTGCCCGATTTGCGACAAGCGCTTTGTGTCCAAATCCGCCGGCAACGCCCACATGAAGACGCACGCGCGCCTAGTCTAG
Protein Sequence
MVPRKFAIGFLFASVGGLVGHRNPKFCNTHFELRKLSLYQDHLYSTSYTEISNLQTNNLHLQCKYLMSIVDPKQSEINPDNILEDHLNESDADLLNLLTTEDDCTDILNNIATNEQFERLMSSETNFVDEFIDEMKKETRKVENTFKCFQCSKVFKTKKLLKKHLFIHTGVRKFACDICSKTFKYRYEVDVHKKSHNKPTFQCDICSKMFIHKSHLTTHRRKHLNEFVAFCKECNMGFVTQFLHKTHINLVHKNLQLVCDVCGARLSSLSSLKEHKLTHDPNYGKERSHVCEICGKSYLNSRNLKGHMKIHKQMRPHVCNICGKSVSSKKILETHIKMHTGLKDFICKVCNKGFASKEYLEVHHRIHTGNKPFSCELCGKRFTQKTSLTVHMRHHTGQRPYKCECGKEFTTKSHLMTHYKAHDVGGVDIDYISRPEKKSEDKHCPHCPKSFPNNRKLKRHLIAHSEQRPYSCDICSKKFKRKYDITVHKRVHGGMLSFQCDFCEKILRSKGSFMTHRRRHLKDYIQVCKICGAGFVTNQEYNNHMGSKHGTSAHICDICGRGCYDKAALQGHMAKHAKDYENNKYECNLCNKTFLQEKYLKHHFFRMHKDGGQKFICDLCGKRLNSKTSLRDHLIMHSGLKPIECKECGKGFALRTTLKAHLRIHTGDRPYVCNDCGKAFTQKTSLTIHLRYHSGERPYVCDICQVGFIAYAPTKRDNREENYQKFEIDVNGQKELTVHDVRCAIPKAPQVCKYCDKVFANSSNLKAHVARHEEIPEHACPKCGKTFSNAISKEVHLEMMHTEHFDATLDGFVCKMCDATAATKTLILRHFNSKHRQVIPTLCDVCGKCFSTPKQLKRHAVVHFHDKPHACQTCGKSFKNRDALNGHMSTHDDFKYVCEECGKEFKKQFSLQEHLKKHAGEFMFLCPICDKRFVSKSAGNAHMKTHARLV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-