Aver008590.1
Basic Information
- Insect
- Asbolus verrucosus
- Gene Symbol
- -
- Assembly
- GCA_004193795.1
- Location
- QDEB01079699.1:280-3958[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 35 0.044 2.2 8.6 1.6 3 23 28 49 27 49 0.95 2 35 0.00092 0.047 13.9 0.9 1 23 54 76 54 76 0.98 3 35 0.0019 0.095 12.9 4.0 1 23 82 104 82 104 0.97 4 35 0.00042 0.021 15.0 5.0 2 23 111 132 110 132 0.96 5 35 9.7e-08 4.9e-06 26.4 3.1 1 23 137 159 137 159 0.97 6 35 0.0052 0.26 11.5 0.7 1 23 168 191 168 191 0.98 7 35 0.0035 0.18 12.1 1.4 1 23 198 220 198 220 0.96 8 35 2.6e-06 0.00013 21.9 2.4 3 23 228 248 226 248 0.98 9 35 3e-05 0.0015 18.6 2.6 1 23 254 277 254 277 0.94 10 35 0.00075 0.038 14.2 0.4 3 23 284 304 282 304 0.96 11 35 2.8e-05 0.0014 18.7 3.4 1 23 310 332 310 332 0.97 12 35 0.0053 0.27 11.5 1.2 1 23 338 361 338 361 0.94 13 35 0.077 3.9 7.9 0.1 1 16 367 382 367 384 0.87 14 35 0.011 0.56 10.5 1.6 3 23 403 424 402 424 0.98 15 35 2.9e-05 0.0015 18.6 0.5 3 23 431 451 431 451 0.99 16 35 0.0038 0.19 12.0 3.0 1 23 457 479 457 479 0.98 17 35 0.00034 0.017 15.3 1.9 2 23 486 507 485 507 0.90 18 35 2.2e-07 1.1e-05 25.3 2.6 1 23 512 534 512 534 0.98 19 35 5.8e-05 0.003 17.7 1.0 1 23 543 566 543 566 0.97 20 35 0.0016 0.079 13.2 1.0 1 23 573 595 573 595 0.96 21 35 4.5e-06 0.00023 21.2 3.5 1 23 601 623 601 623 0.97 22 35 8.2e-06 0.00042 20.4 1.5 1 23 629 652 629 652 0.95 23 35 0.052 2.7 8.4 1.8 3 23 659 679 657 679 0.96 24 35 4.4e-06 0.00022 21.2 3.0 1 23 685 707 685 707 0.97 25 35 0.0016 0.08 13.2 0.5 1 23 713 736 713 736 0.95 26 35 0.0052 0.26 11.5 0.5 3 23 754 775 753 775 0.95 27 35 0.00028 0.014 15.5 0.4 1 23 780 802 780 802 0.93 28 35 0.0045 0.23 11.8 4.9 1 23 808 830 808 830 0.98 29 35 0.25 13 6.2 0.1 3 13 839 849 837 861 0.61 30 35 7.8e-05 0.004 17.3 1.2 1 23 865 887 865 887 0.98 31 35 0.00043 0.022 14.9 1.2 2 23 897 919 896 919 0.95 32 35 0.00029 0.015 15.5 1.2 3 23 926 946 924 946 0.95 33 35 1.7e-05 0.00085 19.4 1.4 1 23 954 976 954 976 0.97 34 35 0.00052 0.026 14.7 1.7 1 23 982 1005 982 1005 0.98 35 35 0.00066 0.033 14.4 3.7 1 23 1011 1033 1011 1033 0.96
Sequence Information
- Coding Sequence
- TTCGACGAAGATTCgattaaaattgaagataaCGAGTTAAAAGTACCGGAAACTAAAACCGACCAACGACACAAGGCTTTTTGTAAACTATGCAAACTGGGATTTCCCGAGTATAAGCAGTTACGAAAGCATCGCAACGAGCGCCACCTATCTGAGAAATACCGTTGTACTGTGTGCAGTAAGTTATTTAAAGATGGCTGGAGTTTAAACAATCACAAAGAAACACATTCCGACCAAAGACTTTACTATTGCGACGTCTGCGATAAGCACTTGAAGACTTACAATCAGCTAAGATCGCATAAGCGAGACCACGCGAATCCCGCTGGTACTAAGTGTCCGGAATGTGGGAAAACTTTCCTCCACCATTCGTCATATAGAAAGCACATGTCCTTACATAGAAACGGACGCCACTCATGTGAAGTTTGTGGCAAAAGCTTTAGAGATAGGTCGAAATTGAAAGCCCACATGAAGAAGCACGAGGATAATTATGTAGCGCCCACCTTCACCTGCGAATTCTGCGAGAAAGTCTATTTGGTCGAGCAGAATCTGAAGAATCACATCCAAACGACGCACGAGGGTGAGCGCAAAACTCATATTTGCGAAACTTGCGGCAAAGGGATGTCTTCGAAGAAGAGTTTGCGCGATCACCAGTATATTCACACAGGGGAAAAACCCTTCGGTTGTAACTTGTGCGACAAGAGTTTTAGGAAAAAAGAACATCTAACCGACCACATTAGAATACACAATAACGAAACGCCACACGCGTGCGAGTTTTGTGATAAAACTTTCACCACGAGGAAAAGTTTGAAGTCGCATTTGGCGGTTTTCCACGAGGGGAAGAAGCACTTGTGCGAGACTTGCGGCAAAGCGATAGCTTCAGCTGAAAGCTTGAAGGTGCACAAGAGGATGCACACCGGAGAAAAGCCGTTTGCGTGTAGCTATTGCAAGAAGAGTTTCGCGAAGAAACAGCACATGACGGTACATTTAAGAGTGCACACTAAAGAAAGACCGCATGCGTGTAAATTTTGCGATAAGAGGTATACCCAAGGGACTTCTTTGTCGCTGCATGTGAGGGCTGTGCATAGTGGGGAGAGGCCCTACGTTTGCACCATCTGCTCTAAAGGCTTTGTCACCAGGAACCCTTTAAAACTCGAGAAAGCTGAGACGAACGGAGACGAGCTAAAGCCGGAAAAGGGGAACAACCTGTGTAAACTgtgcaatttgaaatttcccgCTTATAAAACGTTGCGGAAGCACCGCAAGACCGTGCATACGCCAAAGACGCTGGGCTGTCCGGTTTGTAATAAACTCTTCAAGGACCAATGGAACCTGCGGAAACACGCAGAGACACATTCCGATCAGAAGAAGTACTATTGCGACGTGTGCGAGGAGCACCTGAAAACCTACCAGCAGCTGCAGGAGCACAGGAGGAAGCACAAGAACCCAGCTGGAATGGTCTGTCCCGATTGCAAGAAGATATTCGCCTCTCGCTCGTCCTTCCGTAAGCACTGCTTGATCCACAAGGGCGTGCGGCACACGTGCGAGGTGTGCAAGAAGTCCTTCAGCGACCCCAGCAGTCTGAAGGCGCACCAGAAGAAGCACGAGGAGAACTTCGTGCAGCCGAGCTTCAGCTGCGAGATGTGCGAGAAGGTGTATGCGGTCGAGTATAACCTGAAGAACCACATTTTAACGTGCCACGAAGGCGAGCGGAAGTGTCACATCTGCGAGACTTGCGGCAGGGCGATGTCGTCGAGGAAGAGCTTGAGGGATCACCAGATGATCCACAACAACGAAAGGCCTTTTGCGTGCGATCGGTGCGATAAGAGCTTCAGGAAGAAGGAGCATCTCAGCGACCATCTCAGGACGCACACCAAAGAGAAGCCGCACGTGTGTGACTCTTGCGATAAAGCCTTCACCACCAGGAAGAACTTGAAGGTGCACATCACGATCTATCACGAGGGGAAGAGGCATCTGTGCGAGACCTGCGGGAAGGAGATGGCGTCGGTGACTAGTCTGAAGAATCACAAGAAGACGCATACGGGGGAGAAGCCTTTCGCGTGTACCTTTTGCGGGAAGAGGTTTACGAAGAAGTATCATCTGTCAGTTCACATTAACGTTCACACTAAAGAAAAACCGTACGCCTGCAAGTTCTGCGACAAGAGGTACACGCAAGGAACTTCGCTTTCGCTACATGTTAGGGCTGTGCATAGTGGGGAGAGACCTTATATTGCAGGACGGTACGAATTTGGCAAGAATATGTGCAGAATATGCTATATGACGTTCGATACGTACCCACTTTTGCGCAAGCATCGTCGTGCTGTCCATGCCACAAAAAGATTCGCATGTTTGGAGTGTGGCAAAgcgtttaaagaaaaacagcAACTGAAAGACCACAGCGAATTGCACGTCACTGGAAAAGTGTACCACTGTGACAACTGTGacaaagatttaaaaactCGCAGACATCTCTTGGAGCACAAGAGAATCCACGCTAACTTTGGAGTGAAGTTAGCATGTCCTGACTGTGGCAAAAACTACGACTACGCTTCCAGAGGTGCCTATTATGTCCACATAAAGCAGCATTCTAGCAAATTCATGTGTGATGTTTGTAATAGAAACTTTATTAGAGAAACACTGCttaacaaacacaaaaaaatccaCAGTGCAGACTACATGAAGCCTCTGCTTCAATGCAAATATTGCGATAAGAAGTTTTCTAGCAGAGGAGGTGTTTACAGTCACGTCACGACTTTTCATCAAGGCAAGCGTCATCTTTGTGATGTTTGTGGCAAGTCGTTTACGTCCGTGCTGAGTTTGAGAAATCACAAACTGATACACGCTGGAGAGAAGGAGAAAAGGTTCTTTTGTGATCAGTGCGGGAAGAATTTCTTGAGGAAAGATTATTTGAGAATTCATATGAGGGTGCACACAAAGGAAAGACCCTACAAGTGCAAGTGTTGCGATAAAGCGTTCTCCCAAATCGGTTCTTTGAGTCTTCATGTCAGAACGGTGCATGATGGACAGAAACCGTTCGTTTGTGACATTTGCTCCAAGCGGTTTGCAACCAAAACTTTGCTCAAAATGCATTGTAAGACGCAT
- Protein Sequence
- FDEDSIKIEDNELKVPETKTDQRHKAFCKLCKLGFPEYKQLRKHRNERHLSEKYRCTVCSKLFKDGWSLNNHKETHSDQRLYYCDVCDKHLKTYNQLRSHKRDHANPAGTKCPECGKTFLHHSSYRKHMSLHRNGRHSCEVCGKSFRDRSKLKAHMKKHEDNYVAPTFTCEFCEKVYLVEQNLKNHIQTTHEGERKTHICETCGKGMSSKKSLRDHQYIHTGEKPFGCNLCDKSFRKKEHLTDHIRIHNNETPHACEFCDKTFTTRKSLKSHLAVFHEGKKHLCETCGKAIASAESLKVHKRMHTGEKPFACSYCKKSFAKKQHMTVHLRVHTKERPHACKFCDKRYTQGTSLSLHVRAVHSGERPYVCTICSKGFVTRNPLKLEKAETNGDELKPEKGNNLCKLCNLKFPAYKTLRKHRKTVHTPKTLGCPVCNKLFKDQWNLRKHAETHSDQKKYYCDVCEEHLKTYQQLQEHRRKHKNPAGMVCPDCKKIFASRSSFRKHCLIHKGVRHTCEVCKKSFSDPSSLKAHQKKHEENFVQPSFSCEMCEKVYAVEYNLKNHILTCHEGERKCHICETCGRAMSSRKSLRDHQMIHNNERPFACDRCDKSFRKKEHLSDHLRTHTKEKPHVCDSCDKAFTTRKNLKVHITIYHEGKRHLCETCGKEMASVTSLKNHKKTHTGEKPFACTFCGKRFTKKYHLSVHINVHTKEKPYACKFCDKRYTQGTSLSLHVRAVHSGERPYIAGRYEFGKNMCRICYMTFDTYPLLRKHRRAVHATKRFACLECGKAFKEKQQLKDHSELHVTGKVYHCDNCDKDLKTRRHLLEHKRIHANFGVKLACPDCGKNYDYASRGAYYVHIKQHSSKFMCDVCNRNFIRETLLNKHKKIHSADYMKPLLQCKYCDKKFSSRGGVYSHVTTFHQGKRHLCDVCGKSFTSVLSLRNHKLIHAGEKEKRFFCDQCGKNFLRKDYLRIHMRVHTKERPYKCKCCDKAFSQIGSLSLHVRTVHDGQKPFVCDICSKRFATKTLLKMHCKTH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -