Basic Information

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.00016 0.39 10.5 1.4 19 38 3 23 1 24 0.95

2 10 2.2e-05 0.055 13.2 1.4 19 43 34 55 31 56 0.95

3 10 0.13 3.2e+02 1.2 0.4 16 39 59 79 56 83 0.78

4 10 0.027 66 3.4 2.8 4 39 76 107 73 110 0.76

5 10 0.0003 0.75 9.6 5.8 10 44 110 140 102 140 0.84

6 10 0.00027 0.66 9.8 0.4 13 43 175 202 167 203 0.79

7 10 0.053 1.3e+02 2.4 4.3 19 40 209 227 197 230 0.84

8 10 0.008 20 5.1 0.6 18 29 236 247 229 255 0.80

9 10 8.5e-06 0.021 14.6 1.4 6 44 253 287 249 287 0.87

10 10 0.071 1.8e+02 2.0 0.3 14 29 289 304 287 312 0.75

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.00016	0.39	10.5	1.4	19	38	3	23	1	24	0.95
2	10	2.2e-05	0.055	13.2	1.4	19	43	34	55	31	56	0.95
3	10	0.13	3.2e+02	1.2	0.4	16	39	59	79	56	83	0.78
4	10	0.027	66	3.4	2.8	4	39	76	107	73	110	0.76
5	10	0.0003	0.75	9.6	5.8	10	44	110	140	102	140	0.84
6	10	0.00027	0.66	9.8	0.4	13	43	175	202	167	203	0.79
7	10	0.053	1.3e+02	2.4	4.3	19	40	209	227	197	230	0.84
8	10	0.008	20	5.1	0.6	18	29	236	247	229	255	0.80
9	10	8.5e-06	0.021	14.6	1.4	6	44	253	287	249	287	0.87
10	10	0.071	1.8e+02	2.0	0.3	14	29	289	304	287	312	0.75

Coding Sequence: ATGGCTTGCGATATCTGCCACAAGATGCTTAGCTACAAGTTTTTGAAGAGCCACAAGCTGAGACAGCACAATATCAGCTATGTACCGTCAGATCATCCCTGCAAGCTGTGCGAGAAAGTCTTCAAATCCAATCATGGTTTAAGATCGCATATCAAAACGTTCCatgaaaacaagttttatcTGTGCGACGTTTGTGGAAGATCTGTGGCCTCGGCGACCAGTCTTAAACACCATATGAGTATCCACACAGGAGAAAAACCCTTCACTTGTGATCGCTGCGGGAAGAAGTTTTCGAAAGCAGATTTCTTGAAGACGCATCTCAGAGTACACACCAAAGAGAAACCGCATGTTTGCAAGATTTGCAACAAGAGGTATACGCAAAGGACGTCGTTGAGGCTCCATATAAGAGCAGCCCATAGCAAAGAAAGACCTTATGCTTGTCATATATGCCCGAGGCGGTTCGATGTCAAGATCAAGGTCGAAGAAACAGAAGGTGATTATTCGCagcataatgaaaaatataagacTACGAAGAATCCGTGTGAGTTTTGTGGTAAAACTTTTCTGTCGAAAGGAGGGTTAAGAACGCATGTTAGAATCAGTCATGAGGGGAAACTCCATTTGTGTGAAACTTGCGGAAAAGCAGTTTCCACTATCACTAGTTTGAAGCATCATATGAGGATGCATACAGGAGAGAAGCCTTTCGCGTGTGATTATTGCAACAAAACGTTCACAATGCGCCAGACTTTGAAGATACATGTGAGAGTGCACACCAAGGAGAAGCCGAACGTTTGCAAAATTTGCGGGACTGGGTATTCGCAGAGGAGCACGTTGTCGCTTCACATGAAAACAGTCCATAGCAAAGAAAAACCGTACAAATGCGCGATTTGTTCCAAGCGGTTTGTGGTCAAAGCGCTGCTGAATTCACATTTGAAGTTGCANNATGgcttttga
Protein Sequence: MACDICHKMLSYKFLKSHKLRQHNISYVPSDHPCKLCEKVFKSNHGLRSHIKTFHENKFYLCDVCGRSVASATSLKHHMSIHTGEKPFTCDRCGKKFSKADFLKTHLRVHTKEKPHVCKICNKRYTQRTSLRLHIRAAHSKERPYACHICPRRFDVKIKVEETEGDYSQHNEKYKTTKNPCEFCGKTFLSKGGLRTHVRISHEGKLHLCETCGKAVSTITSLKHHMRMHTGEKPFACDYCNKTFTMRQTLKIHVRVHTKEKPNVCKICGTGYSQRSTLSLHMKTVHSKEKPYKCAICSKRFVVKALLNSHLKLXXGF

Sequence clustering based on sequence similarity using MMseqs2