Aver000069.1
Basic Information
- Insect
- Asbolus verrucosus
- Gene Symbol
- -
- Assembly
- GCA_004193795.1
- Location
- QDEB01000552.1:2029-2566[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.026 64 3.1 0.0 28 39 1 12 1 15 0.87 2 3 2.1e-20 5.1e-17 61.1 0.0 1 45 29 74 29 74 0.98 3 3 6e-18 1.5e-14 53.2 0.0 1 40 81 121 81 124 0.93
Sequence Information
- Coding Sequence
- ATTCCCAGCAGTACCTTGTACAAAATCGCCAGAAGAGAAGGCATCAGACTAGCAGCGCCCTTCAACGCGGCGCCCACGACGTGGACTCCCGAAGATCTCGAGAAGGCCTTAGAATCGATCAGATCGGGTCAGACGTCCGTGCAAAAAGCCTCCACGGAGTTCGGCATTCCAACAGGAACTCTCTATGGAAGATGCAAACGAGAAGGGATAGAACTGTCGAGGTCGAATCCAACCCCCTGGTCCGAGGACGCGATGGGGGAGGCTCTGGAAGCCGTCAGGTTAGGACACATGTCTATCAACCAAGCTGCCATACATTACAACCTGCCTTATTCCTCGCTCTACGGCAGATTCAAGAGGGGCATCAAGTATGAATCGGACAATATCGAGCCTAATTCGGACAGTCAGTCACAGATGGACGGCCACAACTACGGCATGGAGTACCAGAACACCCATCAACAAATTCAATACCAAAACCAAACGAATAGC
- Protein Sequence
- IPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLEKALESIRSGQTSVQKASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRLGHMSINQAAIHYNLPYSSLYGRFKRGIKYESDNIEPNSDSQSQMDGHNYGMEYQNTHQQIQYQNQTNS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -