Acap014844.1
Basic Information
- Insect
- Asbolis capucinus
- Gene Symbol
- -
- Assembly
- GCA_018249125.1
- Location
- DWJZ01012386.1:2450-5756[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 6.9 5.7e+02 2.0 0.4 1 23 93 116 93 116 0.87 2 18 0.0098 0.82 10.9 0.3 2 23 144 166 143 166 0.94 3 18 1.7 1.4e+02 3.9 5.1 1 23 188 210 188 210 0.97 4 18 0.001 0.085 14.0 0.0 1 23 214 236 214 236 0.97 5 18 0.0097 0.8 11.0 2.1 1 23 241 264 241 264 0.88 6 18 0.011 0.91 10.8 1.8 2 23 272 294 271 294 0.96 7 18 0.0026 0.22 12.7 1.1 2 23 302 323 302 324 0.95 8 18 0.00058 0.048 14.8 2.4 1 23 330 352 330 352 0.97 9 18 0.003 0.25 12.5 0.9 1 23 425 448 425 448 0.94 10 18 0.035 2.9 9.2 0.1 2 23 475 497 474 497 0.95 11 18 0.38 31 6.0 1.7 2 23 520 541 519 541 0.96 12 18 0.11 8.7 7.7 0.0 1 23 545 567 545 567 0.95 13 18 1.8 1.5e+02 3.8 2.6 1 19 572 590 572 592 0.87 14 18 0.03 2.5 9.4 1.5 2 23 603 625 602 625 0.95 15 18 3.9e-05 0.0032 18.5 1.0 2 23 633 655 632 655 0.95 16 18 0.00011 0.0094 17.0 0.8 1 23 661 683 661 683 0.97 17 18 4.2e-06 0.00035 21.5 1.4 1 23 689 711 689 711 0.98 18 18 0.00012 0.01 16.9 4.0 1 23 717 740 717 740 0.98
Sequence Information
- Coding Sequence
- ATGCCTATAGTAAGAAGAAGTAAACAGCAAGAGAAATATGAAGACCTTCGCAAAATTTGTGAACTACATGAAGTGAAGACGGAAATCAAGAACGAAAATTTATGTGATTTGAATGAGAGCGTTGATGAGAAAATAccagaaattaaaaatgtgataCGATGGCAGAGGAGGTCGCTAATAGAATCAGTAAAAGAGTTAGATAAACACAGAAAAAATGTAACAGAGGTGTTACTGTGGTCAAATGCGACTCTTTTTCGATCTCGTAGCGACTTAGGTTATTTGTGTTACTTTTGCAAGGAACAATATCTCGAACCAGCTGACTTAAAAAGGCATAATATTAAAGATCATGCCAAAGATATCACTATAGAGGCATTTAAGAAACATAGAGACCTTCAAAAATTTTCCATGAAACTCGATATTACTGACTTAAAATGCAATATATGTTATAAGAGTATCAAATCTCTGCAGGATCTATTTGATCATTTGATAAATGAGCACggaaaatctttttttacagACGTTAAGAATCATATTATTCCCTTTAAATTTGACACTAAAATGTTTCATTGTGCAATATGTTCAATTGAGATTAGCACCTTCAAATCCCTTCACGAGCATATGCACAAACACTTGAggaattttatttgtgatatatgCGATGCGGGCTTTATCAACCGAGGTGGTCTATACAACCATTTGGATCGTCACAATCTTGGAATGTTCTCTTGTCAACATTGCAACAAAGTTTTCGTCACGAAGAGAAGGAAGTTAGCACATGAATTAAGCGTTCACGTCCATGCTAACTTGAGGAACAAATGCAGGTATTGCGACGAGAAATTTACTAACCTAAGGAAGAAGGAACTGCATATGGAGAAGGTACATGGAGCTAAATCTGTTGCTGCTAAATGTCAGGCTTGTGATAAGATACTGGTCAATCGTGATGCTCTTAGGCTACATATCAAGAGACATCATTTAATGGAAAAGAGTCATGAGTGCCCAGAATGTGATATGAAATTCTTTGCTCACAGTTCTCTAAAGATTCATATGGTGAAACATTCCAAAATTCGTGCGAGACGTATCACCAAAACTCTAATCGGACCAACAAAAATCAAGGATGAAACAGATATATTACATGAAAGTGacaaattagtaaaaattaaagttgaagAAAAACCCAAAAAGGGAGGGGAGTTGCAAAAGCATAGAAACAATATGAGAGAAATACTAATGAATTCTAATGCAACTCCAATAAGATGTAGAGGTGGCATTGGATATGCTTGTTGTTTCTGTACGGAACAATTCCCAGATCCAGCTGAtttaaagaaacacacaattaaCTCGCAcgatgaaaaaacaaaaaataatttcatgaaagGAAAGGACATGTATAAACTCCACGTGAAACTCGATATCACAGATCTGAAGTGTAACATTTGCAACGAAAGTATCGATACACTAGAACGATTAATCGATCACCTAAAAAATGATCACAAAAGGAATTTGCATACAGATATTAGGAACCAGGTTCTGCCGTTCAAGTTCGATTCGGAAAACTTAAGATGCTACATTTGTTTGAACGTGTTTCACAAATTCAAGATGTTGTTGGAACACATGAATATACATTACAGGAATTATATTTGCGAGATATGTGATGCGGGTTTCGTAAGTCGTATGATACTTGCACAGCACGCACAGAGTCACAAGCTAGGAAAGTTCAAGTGTGATTTTTGTTTAAAGGTATTTGATACGTTTAGAAAGAAACGGTCTCATGAAAAGTGTATTCATACTCATTCAACGACCTTAAACAAATGTGGCTATTGCAATGAGAAGTTCAAGGATTACCGAAAAAAAGAACAGCACTTAGCTAAAGAACACGGAGTCCATTCAAAATCACTTTCGTGCCAAGCGTGTGACAAGACATTTAGCAACCAGAAAGATTTTACCATTCATGTTAGGAGACTGCATTTAATGGATAGGAGATATAAATGTACTGACTGTGAGATGTCATTTTTTTCGGTATCAGAATTGAAAAATCATGTAGTGAAACACACTGGAGTGAGAACATTTGTGTGTGAAGTTTGTCACAAAGCGTACGGAAGAAAGAAGACGCTCAATGAACATATGAGGATACATGCTGACGATCGAAGGTTTAAATGCGAACATTGTGGAATGGCGTTTGTTCAAAAGTGTAGCTGGCGTGGCCATATGCGCTCTAAACATGGCAAGCAAGTGTAG
- Protein Sequence
- MPIVRRSKQQEKYEDLRKICELHEVKTEIKNENLCDLNESVDEKIPEIKNVIRWQRRSLIESVKELDKHRKNVTEVLLWSNATLFRSRSDLGYLCYFCKEQYLEPADLKRHNIKDHAKDITIEAFKKHRDLQKFSMKLDITDLKCNICYKSIKSLQDLFDHLINEHGKSFFTDVKNHIIPFKFDTKMFHCAICSIEISTFKSLHEHMHKHLRNFICDICDAGFINRGGLYNHLDRHNLGMFSCQHCNKVFVTKRRKLAHELSVHVHANLRNKCRYCDEKFTNLRKKELHMEKVHGAKSVAAKCQACDKILVNRDALRLHIKRHHLMEKSHECPECDMKFFAHSSLKIHMVKHSKIRARRITKTLIGPTKIKDETDILHESDKLVKIKVEEKPKKGGELQKHRNNMREILMNSNATPIRCRGGIGYACCFCTEQFPDPADLKKHTINSHDEKTKNNFMKGKDMYKLHVKLDITDLKCNICNESIDTLERLIDHLKNDHKRNLHTDIRNQVLPFKFDSENLRCYICLNVFHKFKMLLEHMNIHYRNYICEICDAGFVSRMILAQHAQSHKLGKFKCDFCLKVFDTFRKKRSHEKCIHTHSTTLNKCGYCNEKFKDYRKKEQHLAKEHGVHSKSLSCQACDKTFSNQKDFTIHVRRLHLMDRRYKCTDCEMSFFSVSELKNHVVKHTGVRTFVCEVCHKAYGRKKTLNEHMRIHADDRRFKCEHCGMAFVQKCSWRGHMRSKHGKQV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -