Acap008073.1
Basic Information
- Insect
- Asbolis capucinus
- Gene Symbol
- -
- Assembly
- GCA_018249125.1
- Location
- DWJZ01004553.1:530-2539[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.19 15 6.9 0.4 2 23 67 87 66 87 0.91 2 12 5.1e-05 0.0042 18.1 0.3 1 23 93 116 93 116 0.96 3 12 5e-07 4.2e-05 24.4 1.5 1 23 122 144 122 144 0.96 4 12 7.7e-06 0.00064 20.7 0.1 1 23 150 172 150 172 0.99 5 12 1.6e-05 0.0013 19.7 0.4 1 23 178 200 178 200 0.98 6 12 0.00054 0.045 14.9 0.6 6 23 210 227 207 227 0.99 7 12 0.00018 0.015 16.4 0.7 2 23 475 497 475 497 0.96 8 12 5.6e-06 0.00047 21.1 0.7 1 23 503 525 503 525 0.96 9 12 2.4e-05 0.0019 19.2 0.5 2 23 532 553 531 553 0.96 10 12 0.00024 0.019 16.0 1.9 3 23 561 581 559 581 0.96 11 12 0.00011 0.009 17.1 2.2 1 23 587 609 587 609 0.98 12 12 0.00015 0.013 16.7 2.2 1 23 614 637 614 637 0.96
Sequence Information
- Coding Sequence
- ATGACAAGAGCCTACTTAATTTTCGTTTGCATCTCACTTTACAGTGAAAACTTAAACTCATCGTCGTCTATCAATGAACATGAAGATTCAAAGCGATCCTGTGAGAAACATAAAACAATGCCCGAACTATCAGTGGATGACGCCAAGGTTATAGAGCGGACAAATGTGATAATCAACCAAAATGGAAAACGATACGTGACTTGTGACATGTGCAAGAAGAATGTGGCGACGAGTTCTTGGCAGCGGCACTTACGGGTGCACCGCGGCGAGCGGCGCTACAGCTGTCACGCGTGTGGCATGGCCTTCGGAGACAGCGGCAACCTGGCACGGCACACACGCGCCCGTCATGCGCTACTTCGTCCTCACGCATGCCCCGAGTGTGGCCGAGCTTTCGCCCGCAAAACTCACCTACAGGATCACGTACGTTCGCATCGCGAGGCGCGTGACTACGTTTGCGACGTCTGCGGAAAGGCCTCCAAATCAGCTGCCGCACTCCGCATGCACACAAGAACTCACGACACGACTAGCAAGTTTCAGTGCATGGAGTGCGGATCTAAATTCAAGCGAAATGGCGAGCTAAAGGCTCACTTGACGATCCACACGGGTGAGCGGGCTCACAGATGCCCCTGCGGCAAGGCCTTTCGATTACGCAGTCAGCTCACCGTTCATGCCAGAACGCACGCCGGGAAGCCAATAGAAGGGTATGTAGACGTATCCACCGATGTTCCGGTACTGCCACCTCAGCGCTGCTGCAAGACCTGCTCCCTGCACTTACCTGCACCGCGATATAATTTCCACGAAAAAAACGAGCTCTGTAAGGTGGTGTATCGTTGCTGGGAGTGCCATTCGTACCTAGACAAGGATGACGTCTTATTCCATTACAATAAGTATAGCTTTGAGGGTCTTCCGGATGAAAGGAAAGCTGATTTTTATCGCACCGAGAAGGCAATTTTGGAGGAGCTGGTCAAGTTTGACCCACAAGCTCAAATCGAACTAAATCAGCTCAACGACTACTTCCATAGAAAGAAGGCAGAGGATGCTATAAAACTTGAGCGAGTCGACAGACGTAGTTCAGAGCCAAACTCGGATGATCAACAGTCGGAAGGGAGAGAGAAAAATGCTGAGCCGGTGACCCACCCGCCAAAACCTATGAAGAAGAGAAGCTCCAAGGGGACAAGCGACGAGGGACGTTCACCACCCAAGCGTAAGGCTGTCGAGATGAAACGGACCTGGGTTTCGGAACCTTCGCCGGTGAAGCGCCAGAAGAAGAGAGTcttcattacaaaaaacaacCAACGAAGGAAGGACCTCGACGACGGAAATGGTGCTGACGATGAGATCGACGCCTCTGAGGCCTCCCCGGGCGCTGAGGTTACCGAGGCCAAGAAAGAGAGCTCCGACAAGTCGCCCAAGGCTTCCCGGACGTGCCCCATTTGTGGCAAGCAGTACCGCGCCTCCTCGAGCTACTTCTATCACATGAAGTACTTTCATAAGCGCAGCCGCGAGCACGAGTGCCCCGTGTGCAACAAAAAATTTGGCACGAAAGCCAACTTGACGCAGCACGCAAGCATCCATACGGGCTCATACAACCTCGAGTGCCAGGAGTGCGGCAAGCGGTTCAAGTCAAAGCCGAGCCTCTACATCCACGAGCAGAGCCACAGTGGGGCGAAGCGCTGGGCGTGCTCCACGTGCGGTCGCTCGTTCCGCTGGCGCACTCACCTGGCGCGCCACATGACGCGGCATGCGGCCGAGCGCGCGCACGTGTGCGGCACATGCGGTCGTGGCTTCAGCGTGCGCTGCGACCTGTTGCgacacgcacgcacgcacgctGCGGATGAGTATCACTGCGGGACGTGCGGCCTCAAGTTCGCGCAGAAGCGGTATCTGCAGGTGCACATGGTGAAGAAGCACCCAGAGACGCCGACGCTGTCACCCGTCGTAACGCGCTCCTGA
- Protein Sequence
- MTRAYLIFVCISLYSENLNSSSSINEHEDSKRSCEKHKTMPELSVDDAKVIERTNVIINQNGKRYVTCDMCKKNVATSSWQRHLRVHRGERRYSCHACGMAFGDSGNLARHTRARHALLRPHACPECGRAFARKTHLQDHVRSHREARDYVCDVCGKASKSAAALRMHTRTHDTTSKFQCMECGSKFKRNGELKAHLTIHTGERAHRCPCGKAFRLRSQLTVHARTHAGKPIEGYVDVSTDVPVLPPQRCCKTCSLHLPAPRYNFHEKNELCKVVYRCWECHSYLDKDDVLFHYNKYSFEGLPDERKADFYRTEKAILEELVKFDPQAQIELNQLNDYFHRKKAEDAIKLERVDRRSSEPNSDDQQSEGREKNAEPVTHPPKPMKKRSSKGTSDEGRSPPKRKAVEMKRTWVSEPSPVKRQKKRVFITKNNQRRKDLDDGNGADDEIDASEASPGAEVTEAKKESSDKSPKASRTCPICGKQYRASSSYFYHMKYFHKRSREHECPVCNKKFGTKANLTQHASIHTGSYNLECQECGKRFKSKPSLYIHEQSHSGAKRWACSTCGRSFRWRTHLARHMTRHAAERAHVCGTCGRGFSVRCDLLRHARTHAADEYHCGTCGLKFAQKRYLQVHMVKKHPETPTLSPVVTRS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -