Acap010683.1
Basic Information
- Insect
- Asbolis capucinus
- Gene Symbol
- -
- Assembly
- GCA_018249125.1
- Location
- DWJZ01007081.1:1-12429[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 7.6e-06 0.00063 20.7 7.2 1 23 4 26 4 26 0.97 2 16 1.9e-07 1.5e-05 25.8 3.4 1 23 32 54 32 54 0.98 3 16 4.5e-05 0.0037 18.3 6.7 1 23 60 82 60 82 0.97 4 16 4.4e-05 0.0037 18.3 6.5 1 23 88 110 88 110 0.97 5 16 2.1e-07 1.8e-05 25.6 1.9 1 23 116 138 116 138 0.98 6 16 2.2e-05 0.0018 19.3 7.9 1 23 144 166 144 166 0.98 7 16 3.5e-06 0.00029 21.8 6.6 1 23 172 194 172 194 0.98 8 16 1.7e-05 0.0014 19.7 5.2 1 23 200 222 200 222 0.98 9 16 0.00011 0.0092 17.1 4.4 1 23 228 250 228 250 0.96 10 16 4.9e-05 0.0041 18.2 5.5 1 23 256 278 256 278 0.96 11 16 5.2e-05 0.0043 18.1 7.5 1 23 284 306 284 306 0.97 12 16 1.3e-06 0.00011 23.1 6.0 1 23 312 334 312 334 0.98 13 16 1.8e-05 0.0015 19.6 10.2 1 23 340 362 340 362 0.97 14 16 1.2e-05 0.001 20.1 4.5 1 23 368 390 368 390 0.96 15 16 0.00032 0.027 15.6 0.3 1 23 397 419 397 419 0.96 16 16 0.02 1.7 10.0 5.4 1 23 428 450 428 450 0.99
Sequence Information
- Coding Sequence
- GAAACGCCGCACCATTGTCAAATTTGCGGCAAGAAGTATACTAGGAGGGAGCATTTAGTGAACCATATGAGGTCACATACAAACGATACCCCGTTCCGCTGCGAATTGTGCGGAAAGTCTTTCACGAGAAAGGAACACTTCACCAATCACATGTTGTGGCATACGGGTGAAACGCCACACCGATGCGACTTCTGTTCGAAGACGTTTACCCGCAAGGAGCACCTGTTGAACCACGTACGTCAGCACACGGGCGAGTCTCCGCACCGGTGCAACTTCTGCTCCAAGTCGTTCACGCGACGCGAGCACCTGGTGAACCACGTGAGGCAGCACACCGGCGAGACGCCTTTCCAGTGCGGTTACTGTCCGAAGGCCTTCACTAGGAAGGATCATTTGGTGAACCACGTACGTCAGCACACGGGCGAGTCGCCGCACAAGTGTTCGTTCTGCACGAAGTCGTTCACGCGCAAAGAGCACTTGACCAATCACGTGCGGCAGCACACTGGCGAGTCTCCGCACCGGTGTACCTACTGCGCCAAGTCCTTCACTAGGAAGGAGCATCTCACTAATCATATCAGACAGCACACGGGCGAAACGCCGCACAAGTGTACGTTCTGCCCGCGCGCGTTCTCGCGGAAGGTGCACCTCAACAACCACGTGCGACAGCACACCGGCGACACGCCGCACGCGTGCACCTTCTGCGCTAAAAGCTTCACGCGTAAGGAGCATCTCGTCAACCATGTGAGGCAGCACACGGGGGAGACACCGCACGCGTGCACCTTCTGCACAAAAAGCTTCACGCGCAAGGAGCACCTCGTCAATCATGTGAGGCAACACACGGGAGAAACACCGTTCAAGTGCACGTTCTGTACGAAGTCGTTCTCCCGCAAGGAACACCTGACGAATCACGTTCACCTCCACACCGGCGAGACGCCGCACAAGTGTCCTTTCTGTACCAAGACATTCTCGCGCAAGGAGCATCTCACAAACCATGTCAGgATACACACGGGTGAATCCCCTCACCGTTGCGAGTTCTGTCATAAGACGTTTACCCGCAAGGAGCATCTCACGAATCATATGAAACAACACACGGGCGACACGCCGCACGCCTGTAAGGTGTGCCTCAAGCCTTTCACTAGAAAAGAACATTTGAGTACTCATATGAGATCGCACAGTTGCGGCGAGAGGCCGTTCAGTTGCGGCGAGTGCGGCAAATCGTTCCCGCTAAAGGGCAATCTGCTGTTCCACGAGAGATCGCACAACAAGCCGAGTAGTACCAGGCCTTTCCGATGTGATGTCTGTTCTAAAGATTTCATGTGTAAAGGTCACCTAGTATCGCATAGACGGACGCATGCGGAGGGGGGCGAAGCAGCGAGTACTGAGCCCGCGGCGGAGCCCGAAGACTGCGGCGACTGTAACAAGTGTGAGAAGGACGGTCCCGACAGACCGGAGCGGAAACACGATGTCCGGGCATCGTCAGAAAACCGACCTTCGGAAAACAGTACAGCACCATCACAACAGACCAACACGGCTGTGATGCAAATCACTAGTCAA
- Protein Sequence
- ETPHHCQICGKKYTRREHLVNHMRSHTNDTPFRCELCGKSFTRKEHFTNHMLWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCNFCSKSFTRREHLVNHVRQHTGETPFQCGYCPKAFTRKDHLVNHVRQHTGESPHKCSFCTKSFTRKEHLTNHVRQHTGESPHRCTYCAKSFTRKEHLTNHIRQHTGETPHKCTFCPRAFSRKVHLNNHVRQHTGDTPHACTFCAKSFTRKEHLVNHVRQHTGETPHACTFCTKSFTRKEHLVNHVRQHTGETPFKCTFCTKSFSRKEHLTNHVHLHTGETPHKCPFCTKTFSRKEHLTNHVRIHTGESPHRCEFCHKTFTRKEHLTNHMKQHTGDTPHACKVCLKPFTRKEHLSTHMRSHSCGERPFSCGECGKSFPLKGNLLFHERSHNKPSSTRPFRCDVCSKDFMCKGHLVSHRRTHAEGGEAASTEPAAEPEDCGDCNKCEKDGPDRPERKHDVRASSENRPSENSTAPSQQTNTAVMQITSQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -