Amos009706.5
Basic Information
- Insect
- Aromia moschata
- Gene Symbol
- -
- Assembly
- GCA_029963805.1
- Location
- JAPWTK010000050.1:1797337-1806110[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.18 14 7.2 0.2 2 23 217 239 216 239 0.88 2 16 0.63 49 5.5 0.7 1 21 308 328 308 329 0.92 3 16 7.1 5.5e+02 2.2 0.1 1 23 340 362 340 362 0.91 4 16 5.9 4.5e+02 2.4 0.4 2 23 401 424 400 424 0.86 5 16 0.002 0.16 13.3 4.6 1 23 427 450 427 450 0.96 6 16 0.024 1.8 9.9 2.1 2 23 457 479 456 479 0.95 7 16 0.001 0.078 14.2 3.3 1 21 594 614 594 615 0.95 8 16 0.0086 0.66 11.3 1.0 2 23 627 649 626 649 0.92 9 16 0.48 37 5.8 0.8 1 23 652 675 652 675 0.95 10 16 0.42 32 6.0 0.6 3 23 682 702 680 702 0.96 11 16 3.1 2.4e+02 3.3 0.2 1 23 706 729 706 729 0.95 12 16 0.4 31 6.1 0.3 2 23 736 758 735 758 0.92 13 16 0.059 4.5 8.7 0.5 2 23 767 789 766 789 0.94 14 16 1.5 1.2e+02 4.3 0.4 3 19 796 812 795 813 0.97 15 16 4.6 3.5e+02 2.8 2.9 2 23 974 996 973 996 0.93 16 16 0.65 50 5.4 0.9 1 23 1022 1044 1022 1044 0.95
Sequence Information
- Coding Sequence
- ATGGAGACGAAATTATGTAGAATATGCGGAAAGTTAGGACAGAACTTCGTACATATTTTCAAGACCGAAGGGCTCAGGGACAAGATCGAAACATGCTTACCAATTATCGTGTCCCCGCATTGCCTGCTCCCGGACACAATGTGCGGGAGTGCAAAACCGACGACCTCTCTAGTGGAATACGATGTGGACTCCGACTCGAACGTGGACGAGGGCGACGAGAACAGCGGGAAAGTCGTCCTGGGCCACAAATTCGAAACATTCATCAAGATCAATAACCCCGTCGAGTCTGTGCTATCGGGGAAAACCGGCAGGTTCGCCAAACGGTGCTACTTCGACGACGCCGAGAACGACCTGATCTCGGAGATATCGCAGAGGAAGAAGCTGAAACGCAAGGCCGACAGCATCGAGACCTGCCTGCCGAAGATATTCAAGATGGACACGACGAGCCGGAGGAAGAACAAGCAGCCGAAGAGACTGGACACGCACGCGCTGGAGATTCGACAGGAAGCAGCTTTGAGTAACGTGGAAAACTATGACGAGAATGTCGTTAACCCCAACGCGTTGGAAAAACCGGACTTGCCAGTTTGTGATGCGGACAATCAACAGAACCCTGCGCAGgCTGAAAAGTTGTTGTCCTCTCTGCCGCAGAGTTGTTTGTTGTGCGACACGCACTTTTCTGGCCCCGCGGCTCTGGCGACGCACGTTTTCGAAACGCACGGCATCGACATGACGGAAGTCATATCCTCGGGGTCGGGAGAGTCGTTCGCGGAGAAGAGCAAGAAGAAGATACCGAATTTAGTTAAGATTTCTGATCTCAGAAGGAGCGACTCGACGGAAGACAACCTGTCGCCTGAGCAGCAACCCGAGGACCCGCCCACTCTCTTGCCCAGCTTCGTGTGCCCCAACTGCCCCGCCGCCGCCTACCTCTGCGGCATCTGCCTGCAGCAGTGCAACACCTACATGAACCTGAAGAGCCACTTACAGGTCTGCACGCAGCAGCACCCCATCTCCACGCGGTACGTCTGCCAGGTGTGCCAGTACGGCGACGACAACTTCAAGTGGCTCGAGAACCACGTCCTGGTGCACGACTTTCTGCTCGAGGCGTGCCGCAAGCAGTCGAAGATGTTCGATCCGGCCGACTACATCGACGCCGCAGACAACCCCGAGGCCTGCCCTCCCTCTCCCGTCTCCAAGAGCCTCACCTGCGGCGAGTGCGGCCTCGGCGATTTCGAGTCCTTCAAGGCGTTCACGACGCACCGGCGCAGCCAGCACTCCATCTTCCACTGTGACCTGTGCTCCAAGTTCTATGGGCGCAACTCGCACCTCTGGAAGCACGTCAACAGGTTGCACAAGGGCCATCCCAGCATCACCTGCCAGCTGTGCTACAAGACGTCCGCGTCCAAGTACCACCTCGCGCAGCACTTCAACAAGATCCACCTCACCAAGGGCCCGAAGCGCGCCTCCGACGGCCTGTCCGAGCGCGAGGATTTCATGAGCCAGAAGTTCCAGGCGTTCGACTTCCAGTCCGTCAAGCAGAGCTTCATGCGCCAGGAGCTGGCCGAGCAGAAGAACAACAGCGCCAGCGAGCCGGACGACTGCTCCAACAACCACCCCTCGGACCCGGAGGAGGAGCCCGCGCAGGAGATCGAGATCAAGTACGAGCCGCTGCCGGCGATCAAGGAGgaggccgccgccgccgccccgAAGGAGATCGACTCGTCGCACAACCTCTACACCAACATCATAACGAACTACACGCCGCCGGCCAACGAGGGCGACTACAAGTGCCCCAAGTGCTCGAAGGCGTTCCACAAGAAGGTGCTGCTCAAGAAGCACAAGAAGAACTGCCGGCCGCGGCTGCAGAAGGACCTGCTGACGCGCTGCAAGACGTGCGCGCGGATCTTCAAGGACAGGCAGAGCCTCGCCAAGCACCTGGTGAACTACCATTCGGAGTACGCCTGCGAGATATGCAACGAGAAGGTGCAGAGCAAGTGCGAGATAGTGTCACACATCAGGTTCCAGCACCCTGGCTGCCACCTGTTCTGCAAGGTGTGCAGCAACATACTGCGCAGCCGCGAGGACATGAAGGAGCACCTGCGCGACCACCTCGACTCGTACGTGTGCCAGTTCTGCGCCGACTCGCTGCCCAGCAAGATCAAGCTGAAGATGCACATACTCAGCCTGCACCGCAAGATACTCAGCCTGTCGTGCGGCATCTGCCTGAAGCTGTTCGAGACGCAGCACGTGCTCAGGGACCACGTCTCGCTGGTGCACAAGGACCAGCTGGCACCGCTCACCTCGTGCCCGGTCTGCGGCAAGAACTACGGCTCCAAGTGGAAGACGTACGACCACCTGAACAAGTCGCACGGCAGGATATTCAAGGCGTGCAAGACGTGCCTGGAGGTGTTCGACAACGACGCCCAGCTGCAGGCGCACTGCGACGTCACCGCGCACGGCGGCAACAACGTCGGCGCCACCGCCATCCGCAACAGTATTATCGCCCACATCGCCACCGCCATCAACGACGTCGCCGCCAACAACGACCCGCCGATCAACAACGAGGAGGAGAGCGACAGCGGCGACGAGCACGACGACAACGACAACGACAACACCGACCAGAGTAACGACGAGTACGAGAACGACGTGGAGGAGCAGAAGTTCTACGCCGCCTCGCAGCCCGGCTCCAAGATCTCGCTGTTGGAGAAGCGGCTGCTGGGTAAGAAGATCAGCGAGGAGGAGGCGAAGCCGGGGAACAACAAGAAGCCCAACGGGAGCGAGATCAAGACGCGCTCGGCGAAGGAGAGGCTGGCGGACGCCAACAGCAGGCGCGAGGACGACCTGGAGCCGACCAACTCGCCGTCCAACCCGCAGACGAACTCCTCGAAGCGGACGGTGTACGTCAACAGCAACGACCCGTCGTACTGCGAGATCTGCTTCAAGACGTGGCCGGCGAAGAAGCACCTCTGGCAGCACTACATCAGGTGCCACAAGAGCGTCGCGGCGACCGTGTGCACCTGCGCGAGAACCACCCCACGCTGCTGCACGGCCAGGGCTTGGTCCAACTTCATATGCAGGATATGCGGCAGGTACCACAACGCCAGCTCCAAGCTGCGCCTCCACATGGTCATACACGAGAACTTCGACTGGGAGCTGCTGGGCGAGGCGGAGCCTCTGTCGAAGTCCGATGTCAAGCAGGAGAACGACAGGAAGTCTGGCGCGAACGGTTTCAGGGAGTTCAAGATGGAGCCGCAGCACGACGACGCCGCGTACGAGAACATGGAGGTCTACGACGAGAACGACATCAACTACGAGAGCCTGATCGAGCAGGTGGAGTGCTCCTCTCAGTCCGAGGGCGACGAGTCCGACAACGAGCACTCCCAGGTGGAGATCAAGGAGGAGCAGGGCTCCTCCTCCGAGGAGGACGACGACGAGGAGGAGAGCGAGGAGTCGGCGCTGTCCGAGAACTCCATAGCATCGGAGTCGAACGGCGGCGACCGCGAGAGCTACGCCACCTCGGAGACGGACGACTCCAGCTCGAGCTTCACGAAGAGCGACACCTCGGAGGACGAGAGCTCGCGCGAGTCGCGGTCGCTGTCGTCGCAGAGCAAGTACAACGCGCGCTCCAACTCCAACACGGCCGACTCGAGCAACATCTTCAAGCGCAAACCCGACGAGCTGGACTCGGCCATCAAGTCGATCAGCTACGAGTGCTCGCAGCCTGCCGACCTCAAGGTCGAGGAGGACTACTGCGAGATGAACAGCAACTGCCTCAATGAGAACGAGATCGAGTCGGCGGTGGGCAGTATACTGTAG
- Protein Sequence
- METKLCRICGKLGQNFVHIFKTEGLRDKIETCLPIIVSPHCLLPDTMCGSAKPTTSLVEYDVDSDSNVDEGDENSGKVVLGHKFETFIKINNPVESVLSGKTGRFAKRCYFDDAENDLISEISQRKKLKRKADSIETCLPKIFKMDTTSRRKNKQPKRLDTHALEIRQEAALSNVENYDENVVNPNALEKPDLPVCDADNQQNPAQAEKLLSSLPQSCLLCDTHFSGPAALATHVFETHGIDMTEVISSGSGESFAEKSKKKIPNLVKISDLRRSDSTEDNLSPEQQPEDPPTLLPSFVCPNCPAAAYLCGICLQQCNTYMNLKSHLQVCTQQHPISTRYVCQVCQYGDDNFKWLENHVLVHDFLLEACRKQSKMFDPADYIDAADNPEACPPSPVSKSLTCGECGLGDFESFKAFTTHRRSQHSIFHCDLCSKFYGRNSHLWKHVNRLHKGHPSITCQLCYKTSASKYHLAQHFNKIHLTKGPKRASDGLSEREDFMSQKFQAFDFQSVKQSFMRQELAEQKNNSASEPDDCSNNHPSDPEEEPAQEIEIKYEPLPAIKEEAAAAAPKEIDSSHNLYTNIITNYTPPANEGDYKCPKCSKAFHKKVLLKKHKKNCRPRLQKDLLTRCKTCARIFKDRQSLAKHLVNYHSEYACEICNEKVQSKCEIVSHIRFQHPGCHLFCKVCSNILRSREDMKEHLRDHLDSYVCQFCADSLPSKIKLKMHILSLHRKILSLSCGICLKLFETQHVLRDHVSLVHKDQLAPLTSCPVCGKNYGSKWKTYDHLNKSHGRIFKACKTCLEVFDNDAQLQAHCDVTAHGGNNVGATAIRNSIIAHIATAINDVAANNDPPINNEEESDSGDEHDDNDNDNTDQSNDEYENDVEEQKFYAASQPGSKISLLEKRLLGKKISEEEAKPGNNKKPNGSEIKTRSAKERLADANSRREDDLEPTNSPSNPQTNSSKRTVYVNSNDPSYCEICFKTWPAKKHLWQHYIRCHKSVAATVCTCARTTPRCCTARAWSNFICRICGRYHNASSKLRLHMVIHENFDWELLGEAEPLSKSDVKQENDRKSGANGFREFKMEPQHDDAAYENMEVYDENDINYESLIEQVECSSQSEGDESDNEHSQVEIKEEQGSSSEEDDDEEESEESALSENSIASESNGGDRESYATSETDDSSSSFTKSDTSEDESSRESRSLSSQSKYNARSNSNTADSSNIFKRKPDELDSAIKSISYECSQPADLKVEEDYCEMNSNCLNENEIESAVGSIL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -