Basic Information

Insect: Aromia moschata
Gene Symbol: PRDM1
Assembly: GCA_029963805.1
Location: JAPWTK010000137.1:249290-258211[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 5 3.1e-05 0.0024 19.0 2.5 1 23 605 627 605 627 0.99

2 5 9.4e-06 0.00072 20.7 5.1 1 23 633 655 633 655 0.98

3 5 3.5e-06 0.00027 22.0 3.3 1 23 661 683 661 683 0.97

4 5 0.0023 0.18 13.1 2.2 1 23 689 711 689 711 0.97

5 5 0.00013 0.0097 17.1 0.1 1 22 717 738 717 738 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	5	3.1e-05	0.0024	19.0	2.5	1	23	605	627	605	627	0.99
2	5	9.4e-06	0.00072	20.7	5.1	1	23	633	655	633	655	0.98
3	5	3.5e-06	0.00027	22.0	3.3	1	23	661	683	661	683	0.97
4	5	0.0023	0.18	13.1	2.2	1	23	689	711	689	711	0.97
5	5	0.00013	0.0097	17.1	0.1	1	22	717	738	717	738	0.95

Sequence Information

Coding Sequence: ATGGAAGACACAGCGGTATCTTCTGCTACCGAATTCGACCTGGCGAATATCGCTGAGGAAGAATTCGAGTTACATACCACCTACATCGTTCCGGATCTTCCTGTAGAACCCGGAACACCCAACAGGGCAGAAGCTACGCTACCAAGAAATTTGGTTTTGAAATCTTCACAAGCTCTTTCAgatgctCAAGGTGTCTGGAGTACAGGATATATCCCACGAGGGACAAGATTTGGGCCCCTCGTGGGAGAAATTTATGCCAAAGATGCTGTACCAAGTTCTGCGAACAGGAAATACTTTTGGAGGGTTCAGCTTAGGGAAGGATTTTATAGAAACAGTGGTGTGGATAATAAgATATATAAAGATAACGAATTGTACTACTACATAGACGGATTTGACACTTCGAAAGCAAACTGGATGCGATACGTTAACCCGGCTTACTCGAGTGAATCTCAGAACTTAATTGCCTGCCagtataaaatgaatatttatttttacactaTCAAGCCAATTCTACCAAATCAAGAGTTGCTCGTCTGGTACTGTAGGGAATTCGCCGAGAGGCTTAACTATCCCCTGACTGGAGAACAAATGCTTCAGAGGATAAGGCAACAAGTGCAACAAACATCAGAGGTAATAACCGTGAGCACAACCGCGCCTCCAGCTAAAGATCATCCGTACGAACACCAGCTGACACCTACCGAGGGCAGCGTTAGATCCGACGAAGGCTACCACAGCAACGGGTACCACGACGACGTCTTCACGCCTCCCGAGGACTCCAGCGACTCCGACAGCGAGAATAACTACGTCCTGGACTTCAGCAAGAAGCCGAACTCGAAGGAGACCGCCGTCATAAAACCCGTTTCTCCGGATACCCAAAAGAACGAGTACAGGAAGGTGAAGATTAAGATATCGAAGGCGTACCATTACAAGACCGTGAAGAGCGACAGCGATCAAGAAGCGGACAAAGAGCTACCCTCGATAGAAACTGCAGTACCTGAAGTAACCACACTAACCCCTAGAATTATCACGCCCCCAGCGACGGTAATTGTGATGGATTCCCCGCCTCACGAAGTTCCTAACGGCAAACCCTTCTACGAACCCGAAGCCAAGACTACGAATGTGATTTCCCGATACACGCCTCCTACCTCCAGCATCTTGGAGAACATCCTGTTGCGAAGCAGGTTCGACACGAACAATAACGACAACAACCAAAGGCAGTCGAACGCGACGCCTCCTCCGAGCTCCCCCACGGAAATGGCGTACTCGTACAAGAAGAGCCACAGGTACGGGACTGTCCCCTGCAGCCCGGATTCTAGTTCAAACGTGCAGGCGCCGAGCATGCTGCCTCCAAGTCCGGTGATGTTGAAGAATCACCCGCCGAGTCCGGTGCAGTCCGCTAACTTGTACGTACCTCATACCACTGAGAATTATCACGGCAATGCCCAGCCTGCTAATTACTACAATATATATCCCTCGCCGAATGGTATCGTGCACAGCACGATATCGACGTCTCCCACACACACGTACTCCCCTCCCATCACCACGAACTTCGGGAACAACCACCACAACAATGGCGCCAACCTGATAGTTCCGACAAGTCACATAATCAACACGAATCTGTCGCACCACCTGTTGACGCCGTTGCCTCCCCTGCAAATCTCCAACGACAGATCGTCGCCGAGTTCAAGGAGCCCGGACATGAAGTACGACTTGAACGTGTGTTCGAGCAACCCGACGAGTCCCAACGGCGGTCCTTCTAGGGGATATAGGAGCCTTCCGTATCCCCTGAAGAAGAAGGACGGCAAGATGCACTACGAGTGCAACGTGTGCTGCAAGACCTTCGGGCAGTTGTCCAACCTGAAGGTCCACCTGCGCACCCACAGCGGCGAGCGGCCGTTCAAGTGTAACGTGTGCACCAAGTCGTTCACTCAGCTGGCCCACCTGCAGAAGCACCACCTGGTGCACACCGGGGAGCGACCGCACGAGTGCGGCATCTGCAAGAAGAGGTTCTCGTCGACGTCGAACCTCAAGACGCATCTGAGGTTGCACAGCGGCCAGAAGCCGTACGCCTGCGACTTTTGCCCGGCGAAGTTCACGCAGTTCGTGCACCTGAAGTTGCACAAGAGGCTGCACACCAACGAGCGGCCTTATATTTGCCAGGAGTGCGGGAAGAACTACATCAGCGCGTCCGGGCTGAGGACCCACTGGAAGACGACCAGCTGTCGACCTAACAACATTGACGAAGAGTTGACGGGCGAAAACTCTTCTAACTGCTACTACGAGTTCACTGGCTCGGAGGGAAATTTAGGTTCGATGGAACTGAATGACACCCACGAGGATCCGAAGGAGACCTTCGAGATGCACAGCCACCAGCCGCAGACCATAAGCCACCCCGTATTGCACCCGGGTCTGTCGAGGCCGCTGCCGTCTCTCATCCAGAACGGGGCGCACCAGAGGCCGCCCCAGACCGCTCTGCACCCCCCGAAGGAGACCAGGCCGAGCGTCATCGAGTCGTCCCAACCTCACATCATCGAGTGCACTTAA
Protein Sequence: MEDTAVSSATEFDLANIAEEEFELHTTYIVPDLPVEPGTPNRAEATLPRNLVLKSSQALSDAQGVWSTGYIPRGTRFGPLVGEIYAKDAVPSSANRKYFWRVQLREGFYRNSGVDNKIYKDNELYYYIDGFDTSKANWMRYVNPAYSSESQNLIACQYKMNIYFYTIKPILPNQELLVWYCREFAERLNYPLTGEQMLQRIRQQVQQTSEVITVSTTAPPAKDHPYEHQLTPTEGSVRSDEGYHSNGYHDDVFTPPEDSSDSDSENNYVLDFSKKPNSKETAVIKPVSPDTQKNEYRKVKIKISKAYHYKTVKSDSDQEADKELPSIETAVPEVTTLTPRIITPPATVIVMDSPPHEVPNGKPFYEPEAKTTNVISRYTPPTSSILENILLRSRFDTNNNDNNQRQSNATPPPSSPTEMAYSYKKSHRYGTVPCSPDSSSNVQAPSMLPPSPVMLKNHPPSPVQSANLYVPHTTENYHGNAQPANYYNIYPSPNGIVHSTISTSPTHTYSPPITTNFGNNHHNNGANLIVPTSHIINTNLSHHLLTPLPPLQISNDRSSPSSRSPDMKYDLNVCSSNPTSPNGGPSRGYRSLPYPLKKKDGKMHYECNVCCKTFGQLSNLKVHLRTHSGERPFKCNVCTKSFTQLAHLQKHHLVHTGERPHECGICKKRFSSTSNLKTHLRLHSGQKPYACDFCPAKFTQFVHLKLHKRLHTNERPYICQECGKNYISASGLRTHWKTTSCRPNNIDEELTGENSSNCYYEFTGSEGNLGSMELNDTHEDPKETFEMHSHQPQTISHPVLHPGLSRPLPSLIQNGAHQRPPQTALHPPKETRPSVIESSQPHIIECT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01410294;
90% Identity: iTF_01296849;
80% Identity: -