Amos019472.1
Basic Information
- Insect
- Aromia moschata
- Gene Symbol
- -
- Assembly
- GCA_029963805.1
- Location
- JAPWTK010000253.1:168442-170224[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0028 0.21 12.9 0.3 2 23 52 73 51 73 0.95 2 13 0.12 9.5 7.7 3.6 1 23 77 99 77 99 0.98 3 13 3.7 2.8e+02 3.1 0.0 7 23 121 137 121 137 0.92 4 13 1.6e-05 0.0012 19.9 0.2 1 23 143 166 143 166 0.98 5 13 1.3e-05 0.001 20.2 1.8 1 23 172 194 172 194 0.97 6 13 0.048 3.7 9.0 0.1 2 23 201 222 200 222 0.97 7 13 3.8 2.9e+02 3.0 1.0 3 23 231 251 230 251 0.82 8 13 2.5e-07 1.9e-05 25.6 1.2 1 23 287 309 287 309 0.98 9 13 5.8e-06 0.00044 21.3 1.0 1 20 315 334 315 337 0.94 10 13 0.00055 0.042 15.1 4.4 1 23 343 365 343 365 0.97 11 13 4.7e-05 0.0036 18.4 3.6 1 23 371 393 371 393 0.98 12 13 0.51 39 5.7 1.3 2 19 400 417 400 417 0.83 13 13 3.5 2.7e+02 3.1 1.3 1 23 457 479 457 479 0.96
Sequence Information
- Coding Sequence
- ATGTGTACAAGATCTGTCTCACAGTCGTTCGAAGGAAAAAATAACTCCGATATTGATTTTTGCGATTCCAGCGGAGAATGGCCGGAAAATCTGGCCCTGGACAAGCTAAAAGTGGAAATAATAGAGACGGACCCGGAAGGCGGTGATAAAATCGTGTGTAAAACGTGCGAGGTGATATTTATAAACAACCACGAACTCAAGATCCACAACATGATACACTCTCCCGATCATACGTGCTTCATATGCAAAGAGTTCGTCAAGAACAGGTTCCAGTTCGTGGGGCACGTGAGGAAACACATGTGCGCCAAACCGTTCAGCTGCCTCAGCTCGACGACAGGCCTTTCATGTGCACGGAGTGCGGGGAAGGCCTTCAAACAGATCACCACCCTCAAGGACCACGAAGTCGTGCATACCGGAGAGAAGAGGTTTAAGTGCAAGATTTGTGAGGGCGCTTTCGCAACAGCGACCAGCCTCCGGAGACATGTCCGCGTCATGCACGAGACCGTACGCTCCTTCAAGTGCCACTTTTGCGAGGAGGCCTTCACCAGCAAGCAGGCCCTCAAGCAGCACATGGGCATCCACAAAGACGTCGACCCCCTGAAGTGCCAACTGTGCGGCGAACGTATGCCGAACCTAGACGAGTACATCGCGCACAAGAACAAGCACATCGAGCTGAAGCAGTCGGGGAACTGCGAGTACTGCGGCAACAAGACCTTCTACTTCGGCCTCAAGGAGCACATCGAGAAGAAGCACCAGCCGAGATCGTGCGACATCTGCAGCCTGGTGTTCTACGACGACAATTCGAGTTTCCGCTACCTGAAGGCGCACATAAAGCGCCACGAGGAGAACTACAAGAAGTTTAAGTGCGATTTGTGCGACAAGACGTTCTCGTCGAAACGTGACCTGACCGACCACCTCAACGTACACGCCAACGTCAAGAACTACAAGTGCAAAGTGTGCGACAAGGCGTTCCGTACGAAGCAGAGCGTGAACAAGCACATGCCGATACATTCCGACAAAAGACCCTTTCAGTGCAAGCTGTGCGACAAGCGCTTCAAGAAACAGTCCATTTTGCGAAAGCACTCGTTCACGCACTCACGAGCGAGGCCCTACCACTGCGACATGTGCGAGAAGCGGTACAAGTCCAAGGAGTCGCTGCGAGTGCACAGGCTAACGCACCAGAAGAGGAAGAAACGTAAGTGCAGCATGTGCGAGAGGTCTTTCAAGTTCAATACAGTGTTCAAGGGACACGACTGCTTCAGGAACAGGTTCGACGTGAACAATCGCAGGTGTACGTTCTGCAAGAGGCAGTGTAAGAGGTCGGTGACGTACGCCTGCCACATTCTGGGGCATTCCGGCAAGAATCTGTTCGAGTGCGGTACGTGCAAGGACCGGTTGAAGTACGAGTACCGACTGAAGTTGCACGAGATGAGGCACAGGAGTACTGGAGGGGTTCAATTGTGA
- Protein Sequence
- MCTRSVSQSFEGKNNSDIDFCDSSGEWPENLALDKLKVEIIETDPEGGDKIVCKTCEVIFINNHELKIHNMIHSPDHTCFICKEFVKNRFQFVGHVRKHMCAKPFSCLSSTTGLSCARSAGKAFKQITTLKDHEVVHTGEKRFKCKICEGAFATATSLRRHVRVMHETVRSFKCHFCEEAFTSKQALKQHMGIHKDVDPLKCQLCGERMPNLDEYIAHKNKHIELKQSGNCEYCGNKTFYFGLKEHIEKKHQPRSCDICSLVFYDDNSSFRYLKAHIKRHEENYKKFKCDLCDKTFSSKRDLTDHLNVHANVKNYKCKVCDKAFRTKQSVNKHMPIHSDKRPFQCKLCDKRFKKQSILRKHSFTHSRARPYHCDMCEKRYKSKESLRVHRLTHQKRKKRKCSMCERSFKFNTVFKGHDCFRNRFDVNNRRCTFCKRQCKRSVTYACHILGHSGKNLFECGTCKDRLKYEYRLKLHEMRHRSTGGVQL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -