Basic Information

Insect: Aromia moschata
Gene Symbol: -
Assembly: GCA_029963805.1
Location: JAPWTK010000020.1:157552-163039[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.00046 0.036 15.3 2.2 1 23 134 156 134 156 0.98

2 11 0.03 2.3 9.6 1.2 1 23 165 187 165 187 0.98

3 11 0.00044 0.034 15.4 0.7 1 23 196 218 196 218 0.98

4 11 0.0005 0.038 15.2 1.7 1 23 296 318 296 318 0.98

5 11 0.44 34 6.0 0.9 6 23 332 349 330 349 0.93

6 11 1.5e-05 0.0012 20.0 3.6 1 23 358 380 358 380 0.99

7 11 0.036 2.7 9.4 0.5 1 21 391 411 391 411 0.95

8 11 0.014 1.1 10.7 0.4 1 23 409 431 409 431 0.96

9 11 4.1e-06 0.00032 21.8 3.8 1 23 440 462 440 462 0.99

10 11 3.5e-05 0.0027 18.8 2.9 1 23 471 493 471 493 0.98

11 11 0.00027 0.021 16.1 5.7 1 23 502 524 502 524 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.00046	0.036	15.3	2.2	1	23	134	156	134	156	0.98
2	11	0.03	2.3	9.6	1.2	1	23	165	187	165	187	0.98
3	11	0.00044	0.034	15.4	0.7	1	23	196	218	196	218	0.98
4	11	0.0005	0.038	15.2	1.7	1	23	296	318	296	318	0.98
5	11	0.44	34	6.0	0.9	6	23	332	349	330	349	0.93
6	11	1.5e-05	0.0012	20.0	3.6	1	23	358	380	358	380	0.99
7	11	0.036	2.7	9.4	0.5	1	21	391	411	391	411	0.95
8	11	0.014	1.1	10.7	0.4	1	23	409	431	409	431	0.96
9	11	4.1e-06	0.00032	21.8	3.8	1	23	440	462	440	462	0.99
10	11	3.5e-05	0.0027	18.8	2.9	1	23	471	493	471	493	0.98
11	11	0.00027	0.021	16.1	5.7	1	23	502	524	502	524	0.98

Sequence Information

Coding Sequence: ATGAATAAATGGGCAACCACCCAATTAAATATTGAAGAAAATGGTGTAAAAACGCATAATGTTACAGGAAATTATAACGATCTCGACCTACTTCCACAATGTGAGGTGAAACAAGAACCGCTTTATGAATTCGTTAAGAGCGAAGAGTGTGAGGTTAAAATTCCTGTGAGTTTGCTACCTACAGAAACATTTGATCCCGTGAAATTAGAGGGAGAAGACTTTAGCATCAAACGTGAAGATATTGACCTCAAAATTATGCAAGATGACTACAAGAGaTCGGAACAGTATGCGAATCACCCATCTCAATTGGAAGAAAGTGAGTTGGATTTTAATATGATGCCGAAATATAACTTCAAGCAACATATAGTAACACACTTGGATCCTTCTAATGTGACGATGTATCAGTGTAATAGATGCGAATACAAGGCAAAGCGCAAATCGGATCTTAAGCAACATACAGTGACTCATTCCGATTTGTCTGAAATCGCTGCGTTTAGATGCGACCAATGCGAATTCAAGGCGAAGTATATTTCTCGTCTGAAGCAACACATGTTGGTCCATTTAGATCCATCTGAAGTAACTATGTACATGTGCGAAAAATGTGGATACAAAGCAAAACAGGAATATCGTCTCAAAGAGCATATGGCGACCCACCTAGACCCATCTGAAGTCGTTATGCATACATATCTTGTGAAATTAGAGGTGCAAGAGTTTGGTATTAAACAGGAAGAAGTTGATGTTATGGTAACTTCAGACGACAGTATGGGattggGCGAGTATACAGTGACTCCATCTCAATtggaaaatgcaaaaatgaaaGAGGACGGCACCGTGTTTCAGTATGATCAGACAGAGGACTATGACTTTCTGGATACTCCACACCAATATCAGTGTGAGTTATGCAACTACAAAACAAGGTATAAATCTCGTTTGAAAGACCACATGGTGATTCACCTAGATCCATCTAAAACTGCAACATACCAGTCTGACAGATGCGAATACAAGGCAAAACGTAAAAAAAGTCTGACGAAGCACAAAGTCACCCATCAGGACCCTGCCGAAATCACTATGTATCAATGCGACAGATGTGACTACAAGGTAAAGCACAAACCTAATCTAAAGAAGCATATGCTTACTCATCAGGGCTCTGAAGATGCTATAATTCAGTCTCATCAATGTGAGATATGTGGCTTCAAGGCAATGTATAAGTCCCGTCTGAAGGAGCATATGTGCGACAAATGTGAGTATAAGGCGAAGCTTAAACCCAGTCTTACGAAACACATGGTAGTCCACCAAGACCCTTCTGAAGTCAGTATGTATCAGTGTGAGATATGTGAACATATGGTAAAGCATAAATCTAACCTTAAGAAGCATATGATGGTCCATCAGGATTCTTCTGAAGTCACTATTTATCAGTGTGATAAATGTGACTACAAGGCAAGGTATAAATCCCACCTGAAGGAGCATATGTTGATTCATCTGGATCCGTCTGAGATTACTCTGTATCAGTGCGATATGTGTGactataaaacaaaacataaatcTTACCTGAAGAAGCACAAGGTGACCCATCAGAATCTTTCTGAAGTCACGCTGTACGGAGTGCGACAGATGTGA
Protein Sequence: MNKWATTQLNIEENGVKTHNVTGNYNDLDLLPQCEVKQEPLYEFVKSEECEVKIPVSLLPTETFDPVKLEGEDFSIKREDIDLKIMQDDYKRSEQYANHPSQLEESELDFNMMPKYNFKQHIVTHLDPSNVTMYQCNRCEYKAKRKSDLKQHTVTHSDLSEIAAFRCDQCEFKAKYISRLKQHMLVHLDPSEVTMYMCEKCGYKAKQEYRLKEHMATHLDPSEVVMHTYLVKLEVQEFGIKQEEVDVMVTSDDSMGLGEYTVTPSQLENAKMKEDGTVFQYDQTEDYDFLDTPHQYQCELCNYKTRYKSRLKDHMVIHLDPSKTATYQSDRCEYKAKRKKSLTKHKVTHQDPAEITMYQCDRCDYKVKHKPNLKKHMLTHQGSEDAIIQSHQCEICGFKAMYKSRLKEHMCDKCEYKAKLKPSLTKHMVVHQDPSEVSMYQCEICEHMVKHKSNLKKHMMVHQDSSEVTIYQCDKCDYKARYKSHLKEHMLIHLDPSEITLYQCDMCDYKTKHKSYLKKHKVTHQNLSEVTLYGVRQM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -