Amos024355.1
Basic Information
- Insect
- Aromia moschata
- Gene Symbol
- lola
- Assembly
- GCA_029963805.1
- Location
- JAPWTK010000512.1:70473-80325[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00066 0.05 14.8 3.3 1 21 42 62 42 63 0.96 2 11 0.0061 0.47 11.8 0.3 3 21 73 91 71 92 0.93 3 11 0.0029 0.22 12.8 1.8 5 21 174 190 172 191 0.93 4 11 0.00046 0.035 15.3 1.7 1 19 200 218 200 220 0.96 5 11 0.0049 0.38 12.1 1.7 1 23 229 254 229 254 0.94 6 11 0.00052 0.04 15.2 0.3 2 21 267 286 267 287 0.95 7 11 0.00077 0.059 14.6 0.4 1 23 295 318 295 318 0.98 8 11 7.4e-05 0.0057 17.8 1.0 1 21 340 360 340 361 0.96 9 11 2e-05 0.0015 19.6 5.7 1 23 369 392 369 392 0.92 10 11 0.00074 0.056 14.7 0.3 6 21 411 426 407 427 0.92 11 11 0.3 23 6.5 4.4 1 23 435 458 435 458 0.95
Sequence Information
- Coding Sequence
- ATGGTGTTCATTTTTAGCGTTTGTGACGAACTGCTCCTCGTGTCCAAAGTGCAAGAAAGTGTTCAAATACAGGAGCAATCTAATACGACACtttctCACCCGACTACGACAGACCAAATCGTCTTTCGCTGCGACCGCTGTTCAAAGGTCTACCACCACAGAGGCAGCCTCCGCAGGCACCAGAAAGTAGAATGCggaaaatcgaaaaacatcaTCTGCAGAATCTGCGGACACAGCTTCTACTACAAACAGGAGATGCAGTATCACATCCAATTGGCTCTCAAATTGCCAGCCACTGACTTCTTGACAAGAGGCAATACTTTTATCTTCGAATGTCTCCCTCCCAAACTAGTCCAGGGCGTAAGGTCTGGAGGTTCCGGAGGCCACTCTATCATCCTCAACCGAACCAGGAAACACTTCACTGAAGCAATCTTAAACAGgtatattCGCGGTTTTATGGGAGAATGCGCGTTAGAATTAAAGCAAGCTATATTTTTAGGTCCCTACAGATACCACTGTCACTGCGGAAAATCGTACACCATCAAGAACAACCTAAGAAGGCACGTGAGAGTGGAGTGCGGAAAGAGAGACAAATACTTTACTTGCCCAAACTGCGGAAGGAACTACAAACACAAGGCCTCCTTGTACAATCACAGCACCTTCGAGTGTGGCAAAGGCAAGTCGTTCTCGTGCATGGTCGAAGACTGTACATACAAGACGAAAAGAAAGGGGAGCCTTAAGTCGCACTTGATGAAAAAACACTTAGATCGGTCGAGTACTCCGTTTGCAACAACCAACGTGTGCCAGGGCTGTAATAAGATTTACAAATTAAGGTCGAGCCTGCTTCGCCATCTACGATTGGAGTGTGGAAAGGACGCCCAGTTCAAATGTCCGTACTGCACTTACGCATCCAAACAGAAGCCGCCTCTCTTAAACCACGTGAGAGTCAAGCACGCTGCGTTTACGGAAACGTTTGTGTCGATGTACATGCAGTTCGCGAAAGACCTCAATGACCGTTACATGTGCCCCAACTGCAACTCCTCGTACAAGCAAAAGGGCCACTTGGTGAGGCACATCAAGTACGAGTGCGGGGTGGAGCCGCAGTTTATGTGCCACATTTGCTCCAGAAGGTTCAAGCACAAAAGCAACTTGAAAGCGCACTACATCTTCCTGCACAAGTCATCTATGCAGCAGAGTGCAGGGGGGAAGGAGAGTGGATACAAATGCCCTTGTGGCAGAGCCTACTCCAAGCCCTACAACCTCAAGCGGCATCAGCGATACGAATGCGGGAAGGAGCCCTCTTTCCAGTGCAAAGTGTGTAATTACAGATGCGGCAGGAAGAATATACTTCGATCGCATTACGCCAAGAAACACGGCATTTCCAACGTGGCGATTTAA
- Protein Sequence
- MVFIFSVCDELLLVSKVQESVQIQEQSNTTLSHPTTTDQIVFRCDRCSKVYHHRGSLRRHQKVECGKSKNIICRICGHSFYYKQEMQYHIQLALKLPATDFLTRGNTFIFECLPPKLVQGVRSGGSGGHSIILNRTRKHFTEAILNRYIRGFMGECALELKQAIFLGPYRYHCHCGKSYTIKNNLRRHVRVECGKRDKYFTCPNCGRNYKHKASLYNHSTFECGKGKSFSCMVEDCTYKTKRKGSLKSHLMKKHLDRSSTPFATTNVCQGCNKIYKLRSSLLRHLRLECGKDAQFKCPYCTYASKQKPPLLNHVRVKHAAFTETFVSMYMQFAKDLNDRYMCPNCNSSYKQKGHLVRHIKYECGVEPQFMCHICSRRFKHKSNLKAHYIFLHKSSMQQSAGGKESGYKCPCGRAYSKPYNLKRHQRYECGKEPSFQCKVCNYRCGRKNILRSHYAKKHGISNVAI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -