Amos015509.2
Basic Information
- Insect
- Aromia moschata
- Gene Symbol
- -
- Assembly
- GCA_029963805.1
- Location
- JAPWTK010000135.1:684281-703938[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 0.093 7.2 8.1 5.1 1 23 20 42 20 42 0.98 2 22 0.0051 0.39 12.1 2.6 1 23 51 73 51 73 0.95 3 22 0.01 0.79 11.1 2.1 1 23 82 104 82 104 0.97 4 22 0.029 2.2 9.7 0.1 1 23 113 135 113 135 0.97 5 22 0.017 1.3 10.4 1.6 1 23 144 166 144 166 0.98 6 22 0.0074 0.57 11.5 0.6 1 23 175 197 175 197 0.97 7 22 0.00042 0.032 15.5 3.3 1 23 206 228 206 228 0.97 8 22 0.00054 0.042 15.1 3.2 1 23 237 259 237 259 0.98 9 22 0.00019 0.014 16.6 1.5 1 23 268 290 268 290 0.98 10 22 0.19 15 7.1 2.4 1 23 299 321 299 321 0.98 11 22 0.0016 0.12 13.6 1.8 1 23 330 352 330 352 0.98 12 22 0.017 1.3 10.4 4.5 2 23 396 417 395 417 0.96 13 22 0.00026 0.02 16.1 1.1 1 23 427 449 427 449 0.98 14 22 0.086 6.6 8.2 0.5 1 23 458 480 458 480 0.97 15 22 0.018 1.4 10.3 1.0 1 23 489 511 489 511 0.98 16 22 1.6 1.2e+02 4.2 1.2 1 23 520 542 520 542 0.96 17 22 0.019 1.5 10.2 1.2 1 23 551 573 551 573 0.98 18 22 0.00093 0.071 14.4 1.1 1 23 582 604 582 604 0.97 19 22 0.00022 0.017 16.3 2.7 1 23 644 666 644 666 0.98 20 22 0.00014 0.011 17.0 2.7 1 23 675 697 675 697 0.99 21 22 0.0088 0.68 11.3 3.2 1 23 706 728 706 728 0.96 22 22 0.74 57 5.2 1.3 1 23 737 759 737 759 0.97
Sequence Information
- Coding Sequence
- ATGGAATATCCCAACGGTCTTCATGTCAAGTTAATCGAAGACACAGAAAGTACCATTTACCATTGCAAACTTTGTacctacaaaacaaaattaaaaaaatatttgtcccgACACATTTCGGTTCATAAGGATGGTCCCGAGataacgacttatcaatgcaAGGTGTGCCTTTATACGACGAAGCGGCAGCGTGATCTGCACAGGCACGAAGTGATTCACCAAGATGCTTCTGAGGAAACGACTTATCACTGTGAACTCTGTCCTTATAAGACGAACCGGGAGAGTAAACTGTCTAAACATGTAACTATTCACCAAGACGCTTTCGAAGTAACGACTTACGACTGCAACTTGTGCCCCTACAAGGCGAAACTGAAATGGATGTTGGCCCAGCACATGTTGATTCACAACGATAATCCTAACTTAACAATGTATCACTGCGAACTTTGCCCGTTTAAGACGAAATGGAGAGGAAACTTGACCAAACACATGCTGGTTCACGAGGACGCTTCCAAAGTGGCGACTTACGATTGCAAACTTTGTTCCTACAGGACGAAGTGGAAAAGTAACCTGATCGaccacatgctgattcataaggacgTCTCCAAAGTGACGACGTATCAGTGCAAACTGTGCCCCCACAAGACGAAACGCAAGAGCAGTCTGTCCAGGCACGAGCTCATCCACCAAGACGCTTCCAGGGTGAATATTTACCAGTGCAAATATTGTCGGTACGAGACGAAACGGAAGGAAACCTTATCCAGACACGAGCTGACTCATCAAGACTCCTCCGACGTAACGAGTTATCAGTGCACGCTTTGTCAGTATAAGACGACGAGGAAAGAATCTTTGTCCAGACACGTTCTGGTTCACCAAGACGCTTCGGAGGCAGTGACTTATCACTGCGAAGTTTGTCAGTATAAGACGAAGTGGAAGAGCGGTCTGGCCAGGCACTTCCTGACTCACAAAGACGCTTCCGAGGTGACGACTTATCAGTGCAACTTctgtccctataaggcgaaactcAAGAATTATTTGAAGAagcacatgttgattcataaggataatTCCCAGACCGCTTCTGAAATAGACATGGAGTATCCCAAGGGACTCCAAGTCAAATCAGTTAAAGACGCGGAAGGACCAACTTATCATTGTAAGCGTTGCACCTACAAGGCGAAATTAAAAAAGTGCAAAACCTGTCTTTATACTACGAAGCGGAAGAGTGATCTGCACAGACACGAACTGATTCACGAAGACGCTTCCAAGGATTCGAAAACTTATCAGTGTAAACTTTGTTCTTATAAGACGAAGCGGGAGGGTAATCTGTCCAGACATGTGCTGGTACACCGAGACCCTTCCCACGCAACGACCTACGACTGCAATTTGTGCTCCTACAAGGCGAAATGGAAAAGGAATTTGATCCAGCACATGCTGATCCACAAAGACGCTTcggaggtaacgacttatcagTGCGAACTGTGCTCGTACAAGACGAAATGGAAGGCGTACTTGTCcaaacacatgctgattcacaaggacgtttccgaggtaacgacttacgATTGCGACTtctgttcctacaaggcgaaagaGAAGAGGATTTTGAACCGGCACATGTTTGTTCACAAGGATGCCTCCGAGATAACCACTTATCAGTGCAAGTTTTGTCCGTATAAGACGAGGTGGAAGGGTACGCTGTCCAGACATGCGCGGATTCACCAAGACGCGTCCAAGGAGACGACTTTTCAGTGTGAACTGTGTCCTTACAAGACGAAACGGGAGAGTAAACTGTCTAAACATGTGACGATTCACCAAGACGCTTCCGGGGTAACTACCTACGACTGCAACTTCTGTTCCTACAAGGCGCATCTGAAAAGGATCTTGACCCAGCACATGCTGACTCACAACGATAATCCTAACGTGACGATTTACCAATGCAAGCTTTGCCAGTACAAGACGAAGCGGAAGAGCAGTCTGTCCAGACACGAACTGATCCACCAGGACGCTTCCGAGACAATGACTTATCAGTGCAAATTGTGTCCTCATAAGACGAAACGGAAAGGGGATCTGTCCATGCACATGCTGAcccacaaagatgcttccgaggtaacgaGTTACGATTGCAGTTtatgttcctataaggcgaagCACAAGAGGTATTTGACCAGACACATGCTGGGCCATAGGGATAAtaccgaggtaacgacttatcagTGCGACAGGTGTCCTTATAAGACGAAATGGATGGCGTATTTCTCGAAACATTTGCTGACTCACCAAGATGCCTCTAAGgATGCTACATCCGCACAAAATCAATTCGAGGGTATGACGGAACACCATGCAGTCGAGGAATGTTCAGCCATCAAGTCAGAAAATCTTGATATTAAAGATGAGGAAAACGAACGTGATAAAATTTAA
- Protein Sequence
- MEYPNGLHVKLIEDTESTIYHCKLCTYKTKLKKYLSRHISVHKDGPEITTYQCKVCLYTTKRQRDLHRHEVIHQDASEETTYHCELCPYKTNRESKLSKHVTIHQDAFEVTTYDCNLCPYKAKLKWMLAQHMLIHNDNPNLTMYHCELCPFKTKWRGNLTKHMLVHEDASKVATYDCKLCSYRTKWKSNLIDHMLIHKDVSKVTTYQCKLCPHKTKRKSSLSRHELIHQDASRVNIYQCKYCRYETKRKETLSRHELTHQDSSDVTSYQCTLCQYKTTRKESLSRHVLVHQDASEAVTYHCEVCQYKTKWKSGLARHFLTHKDASEVTTYQCNFCPYKAKLKNYLKKHMLIHKDNSQTASEIDMEYPKGLQVKSVKDAEGPTYHCKRCTYKAKLKKCKTCLYTTKRKSDLHRHELIHEDASKDSKTYQCKLCSYKTKREGNLSRHVLVHRDPSHATTYDCNLCSYKAKWKRNLIQHMLIHKDASEVTTYQCELCSYKTKWKAYLSKHMLIHKDVSEVTTYDCDFCSYKAKEKRILNRHMFVHKDASEITTYQCKFCPYKTRWKGTLSRHARIHQDASKETTFQCELCPYKTKRESKLSKHVTIHQDASGVTTYDCNFCSYKAHLKRILTQHMLTHNDNPNVTIYQCKLCQYKTKRKSSLSRHELIHQDASETMTYQCKLCPHKTKRKGDLSMHMLTHKDASEVTSYDCSLCSYKAKHKRYLTRHMLGHRDNTEVTTYQCDRCPYKTKWMAYFSKHLLTHQDASKDATSAQNQFEGMTEHHAVEECSAIKSENLDIKDEENERDKI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -