Basic Information

Insect: Aromia moschata
Gene Symbol: -
Assembly: GCA_029963805.1
Location: JAPWTK010000015.1:385052-388850[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 1.7e-05 0.0013 19.9 1.5 2 23 157 178 156 178 0.97

2 11 0.0011 0.086 14.1 7.1 1 23 183 205 183 205 0.97

3 11 2.3e-05 0.0018 19.4 3.6 1 23 211 233 211 233 0.97

4 11 0.00038 0.029 15.6 1.7 1 19 239 257 239 258 0.96

5 11 0.0074 0.57 11.5 4.2 1 23 267 289 267 289 0.98

6 11 2.1 1.6e+02 3.8 0.0 1 23 466 489 466 489 0.94

7 11 0.00017 0.013 16.7 1.0 1 23 521 543 521 543 0.97

8 11 0.0013 0.099 13.9 0.3 3 23 546 566 546 566 0.97

9 11 1.9e-06 0.00015 22.8 0.4 3 23 575 595 574 595 0.99

10 11 7.7e-07 5.9e-05 24.1 1.2 1 23 601 623 601 623 0.98

11 11 1.6e-06 0.00012 23.1 2.5 3 23 631 651 629 651 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	1.7e-05	0.0013	19.9	1.5	2	23	157	178	156	178	0.97
2	11	0.0011	0.086	14.1	7.1	1	23	183	205	183	205	0.97
3	11	2.3e-05	0.0018	19.4	3.6	1	23	211	233	211	233	0.97
4	11	0.00038	0.029	15.6	1.7	1	19	239	257	239	258	0.96
5	11	0.0074	0.57	11.5	4.2	1	23	267	289	267	289	0.98
6	11	2.1	1.6e+02	3.8	0.0	1	23	466	489	466	489	0.94
7	11	0.00017	0.013	16.7	1.0	1	23	521	543	521	543	0.97
8	11	0.0013	0.099	13.9	0.3	3	23	546	566	546	566	0.97
9	11	1.9e-06	0.00015	22.8	0.4	3	23	575	595	574	595	0.99
10	11	7.7e-07	5.9e-05	24.1	1.2	1	23	601	623	601	623	0.98
11	11	1.6e-06	0.00012	23.1	2.5	3	23	631	651	629	651	0.95

Sequence Information

Coding Sequence: atggagTCAGAGACGCTAGACCTGAGTCGGATTTGTCGAACGTGTAAAAGCAAATCATCCCAGATGCAGTCGCTTTTCGATGAATACGAAGTGTCGAACGAAAGCCTTCATATTGACAGTATGCTGATGGCCTGTTCTTCGATCCAGGTAACGCGTGACGATGGATTGCCTTCCCAGATCTGTCAAGTGTGCGTTGACCAGTTAAAAAACGCTTTTGCGTTCAAAAGTCAATGTGAAAGGGTAGACGTGAGTTTGAGGGAGTACGTGAAAAACGTGAAGGTCAACGACATCAAGGAGGAAGAGGAACATTCGGATCTTGAAGCCCCCGCGATGCCTTCCCCCGACGACGACACCGCCTCCAAGGACTCGAGCACGCGGGAAGGCACCCCCATCCTGGTCACGCCCAAAATTGAAACTGACGACGTTCCGTTCGCAGCCACCGATTTGGCTAGCAAACGGAAGCTGGTGACGTGCAAGGTGTGCGGCAAGGAGTTCACCACGCGTAAGGGCCTGCGCTACCACAAGCGCCTCCACACCGGCGACATGTTCAAGTGCAAGCACTGCAGCAGGCAGTACACGAGGCTGAACCACCTGCAACGCCACGAGGAGTCGCACAGGAAGCGGAAGGTCCACGTGTGTAAGATCTGCGGGAAGACGCTCAAGAGGATGGAGCACCTGAGGCGCCACCTGGTGACTCATTTAGCGGTGAAGCCGTTTGCTTGTAACACCTGCAACAGGAGCTTCAGCCGCGTGGAGCATCTGCAGCATCACGCGCCTAGGTGTAAAGGTCACATCGTCTTCCACTGCGACATCTGCAATCAGCCGTTCAAACACGAGGACACCATGTCGCTGCACAAGCAGACGCACGACGGCCAGGAGAAGAACCAGTTGACCATCGAAAACTTGGATAACATCGACGAATATTATTATCAAATGGAGCAGGACGACACGTACACCTTTTCGGATTATTCAGACGTCGATGATGGTGTAGACTCGCCATTCCCGGATTCCTCGGATATGGGCAGCTGCTTGGAACCCCAAGTGGAGGTCGCCGAACACACAGACACGGAACAGAGAAAAGAGgTAGCCAGTGATGATAGTCAAGCTTTGGAGAAAGTCGACAGAGAAGTTGAAGTGAAAGTCGAGAGCAACGTtagtgataataataataaaaacgagGGTACTTCTTCTAACGCTAATCAAGTCACGAGTGACGCCTCTGGCAGCCACGGTACCATGTCCCACTATCTTCCCGGGAGGTTTGCGTTGCTGCAGAGGAAGCACGACAGAATCGGACGTGGCCACAACTCTTCCCAGGTAGACGTGACCGCCACAAGCAAAGGTCGTTACTTCCCTTCAAGGGAGGATCCAGTGAAGCAGGAGGAGTGCGTGGAGTTCCCCTGTCCCGCCTGTAGAGCGATATTCCCCGCCGTGGGCCAGCTCGCCACTCACGCCAGGGAGAAGCACGAGGAGCTCACGGTGTACAAACGCAGGGTAAGTACTGGGTCTAGAAGTTTCACCGATATCAAAACGGTTAACACTGTTATGGGAGACAACAGATACAAGTGCACGGTATGCTACAAGGGATTCCCCACGGAGATGTACCTCAACGTCCACATGTACTACCACAACGGGTGCACGATGTGTGAAGAGACGTTCCCCAACAAGGCGCTTCTCACGGAACATGTCAAATTTCATAAGAAGAGCATCAAGAAGGCTCTGTGCACCGAATGCGGACGCGGGTTTGTCCGAAACGATTATCTTGTGCAGCACATGCGGCGCCATCGTGGGGAGAAGCCCTTCAAGTGCCAGTATTGCGGAAAAGGGTTTCCTAGGAAGACAGACCTGACTGTCCACGAGAGGTACCACACGAGGGAGACGACCCACCTGTGCTCAGTCTGTGGAAAAGCCTTCCagagGCGGTATAACTTGACCACGCACATGAGGCTCCACACCGGTGAGAAGCCGTTCAAGTGTGCCTCTTGCGAAGCAGCTTTCGCCCAAACGAGGACCTGA
Protein Sequence: MESETLDLSRICRTCKSKSSQMQSLFDEYEVSNESLHIDSMLMACSSIQVTRDDGLPSQICQVCVDQLKNAFAFKSQCERVDVSLREYVKNVKVNDIKEEEEHSDLEAPAMPSPDDDTASKDSSTREGTPILVTPKIETDDVPFAATDLASKRKLVTCKVCGKEFTTRKGLRYHKRLHTGDMFKCKHCSRQYTRLNHLQRHEESHRKRKVHVCKICGKTLKRMEHLRRHLVTHLAVKPFACNTCNRSFSRVEHLQHHAPRCKGHIVFHCDICNQPFKHEDTMSLHKQTHDGQEKNQLTIENLDNIDEYYYQMEQDDTYTFSDYSDVDDGVDSPFPDSSDMGSCLEPQVEVAEHTDTEQRKEVASDDSQALEKVDREVEVKVESNVSDNNNKNEGTSSNANQVTSDASGSHGTMSHYLPGRFALLQRKHDRIGRGHNSSQVDVTATSKGRYFPSREDPVKQEECVEFPCPACRAIFPAVGQLATHAREKHEELTVYKRRVSTGSRSFTDIKTVNTVMGDNRYKCTVCYKGFPTEMYLNVHMYYHNGCTMCEETFPNKALLTEHVKFHKKSIKKALCTECGRGFVRNDYLVQHMRRHRGEKPFKCQYCGKGFPRKTDLTVHERYHTRETTHLCSVCGKAFQRRYNLTTHMRLHTGEKPFKCASCEAAFAQTRT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -