Amos010015.1
Basic Information
- Insect
- Aromia moschata
- Gene Symbol
- -
- Assembly
- GCA_029963805.1
- Location
- JAPWTK010000052.1:1541987-1549603[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.047 3.6 9.0 1.4 3 21 11 30 9 31 0.86 2 14 0.57 44 5.6 0.1 1 12 153 164 153 167 0.89 3 14 0.18 14 7.2 5.2 1 20 294 313 294 315 0.94 4 14 0.31 24 6.4 2.9 1 23 323 345 323 345 0.97 5 14 0.00013 0.01 17.0 2.0 1 23 363 385 363 385 0.99 6 14 0.095 7.3 8.0 0.6 1 23 416 437 416 437 0.89 7 14 9.7e-06 0.00074 20.6 0.4 1 23 443 465 443 465 0.97 8 14 0.00014 0.011 16.9 0.5 1 20 471 490 471 492 0.94 9 14 2.9e-05 0.0022 19.1 2.3 1 23 499 521 499 521 0.98 10 14 7.9e-06 0.0006 20.9 3.3 1 23 527 549 527 549 0.98 11 14 0.00017 0.013 16.7 6.6 1 23 555 577 555 577 0.99 12 14 2.4e-06 0.00019 22.5 0.4 1 23 583 605 583 605 0.98 13 14 6.4e-05 0.0049 18.0 0.1 1 23 609 631 609 631 0.97 14 14 0.0002 0.016 16.5 0.3 1 23 639 661 639 662 0.95
Sequence Information
- Coding Sequence
- ATGGGATCGCTGTCGGCGTTATCTTTGAGCTGTCCTCTTTGTTGCGATGAAAAATTCTCTTCTCACAGCTCCCTAAAATATCACATTCTTAGCATAATAGATAATTTATTGTGCCCGGCCTGTGGCGCCAGATATGACTGCATGCTGGAGTTGGCCGAGCACTTGGGTAGGGAATGTAAAGAAAAAGAACTGAAAGAACTCCCTGTACCTCCTTCATTGtctgaaaatataaaacaggAGGCTCAGAGCCAAACCCAGGAATTTCCATTACTTCAAAATGCAGCTCACGAACTTTCAAATAACTCCGAGACGGTATTGCTTAATCCTAAGATAGAAGCGGAGGACGATGCTAATGATAGTAACAATAGTATTTTAGCAAAAGCGTTGATGGCAAAACCCCCAAGTAATAACACTGAGCTTGTTGAAGCCGAAGAACAGCTGCCTGTAGGAGCACTATATATGTGTCAGATGTGTGACATGAGTTTTAATTCCATTGAGGAGCACTTGGAAAAGTATCATGCTGGAGAAGAACTAATATTGgaaaCTGATGAAAACTTGGTGGATGAATCCAATGCCGATGTTATAGAAGAGGATGAAGGGGGCACAGATATAGATGAGAACATGTTTGCATTGAAAGATGATTCAGAAAATGGGGACGACCTTGAAACTGATGAGAAAACGCAAACTATCGAGGAACAGCAGTGCTTGGATAAAGAGGGTAGGATCTATACGAGAAAAGTAGTGAAAATTGATAAATTCTGGATAGACGACCTCAACTCCCCCATGACCGAAAAGTATGTCTTAGAGAATGGAAAAATTCGGAAGATATCTGAGGACGAAGCGGAAAATATTCTTGATAAAGATGCTATAATACAAATCCATCAGTGTCCCAAGTGCTACCTGCAGTTCCCTAATTTGGACCACTACAATAAGCACTTTTGTGACCCCTCCAAGGTAAAGAACAAATTCAAATGCATTCATTGCACTGCAGTTTTCCTCAACTACCAGTCGTTGACGTCCCATATGAAGTCGCATGTAAGCAAAGATCCCAGCGGGAAATTCAAGAGGGTCGTAACTCTAGGCCCGTACACTTGTGACATTTGCAAGACAATGTTTCCCTCCTTCAAGAGCCTCCGGCTACACAAAAGGATGCACGACCCCATCAAGGACAAAGCCCCCGAGGCTCCGGTAACCTACAGCATCACAGGACCCATAGATGAGGCCAGAGAGATTGTACGTCACATGTTCATCTGCAGCATATGCAACAAGACGTACGACAAGGAGTACGAAGACGTACACATGAGATCGCACAGCCAGGAGGAGAATTATGATTGTCCCGTATGCAACCGTAAGTTCTATACCAAGGAAAACCTGGAGATGCACGTGAAAGCCCACAGCAACGGCAAAAAATTTTCCTGCTCATACTGCAAAAAGCCTTTCACTACCTACGACGCACTTCAGGATCACGTAACCAACCAGTGTCAGAAGAGGCAGTACGAGTGTCAGTATTGCGGCAGACGATTTTCTCGGCCCCACGAGAAAGTCAAGCACGAGAGGATCCACACCGGAGAGAAGCCACACGTGTGCCAAATTTGCGGTAAGGCCTTCCGTGTGAGCTACTGCCTGACACTGCATCTGCGAACGCACTCCGGCACGAGGCCCTATCAGTGCACCACGTGTGGCAAGCGATTCAAGTCTCACAGCGTCTACAATCACCACCTGCTCACTCACTCCGATGTCAGGGCGTACAAGTGCCCCTACTGCCCAAAGGCGTTCAAGACCAGCGTGCAGCTGGCGGGGCACAAGAACAGCCACATCAAACCTTTCGCTTGCACGGAATGCAATAGGCCTTTCGCCTCTCTGTACGCGGTCAGGGCGCACATGGAGACGCACAAGAGAGAGAACAACCTCAAGTTTGACTGTTGGATGTGCGGGGCAACGTATGCCAGGGCTTTCGCTCTGAGGGACCACATCAAGAGTCACCACGCTGGTGGGGAAAATATGGGTATGGACGATAACGTGTTGATTGAGCTGGAGACAAACGAAAGTACCAGTCAAATAGAGAATGAGATGAATGCGTCTATCGGGCAGGAAATGGAGATTGACACCTCAAATACCTCCTTCATCAACACCATTTGGCTCTCAAAGGACGCCTCCGAGATGATCATCAAGACCAGTATCGTCCTACCTGTGGTGATCCTAGGGATCATGGGAAATATATTAGTAATCTTCATACTAGTGAAAAACCCTTACATCCGAACCCCGACCAACCTTCTCATAGGGAATATGGCCGCAGCCGACTTACTGTCGCTTCTGTTGCATCCCTGGGTTATTCTAACGAAAGACAATGGTTGA
- Protein Sequence
- MGSLSALSLSCPLCCDEKFSSHSSLKYHILSIIDNLLCPACGARYDCMLELAEHLGRECKEKELKELPVPPSLSENIKQEAQSQTQEFPLLQNAAHELSNNSETVLLNPKIEAEDDANDSNNSILAKALMAKPPSNNTELVEAEEQLPVGALYMCQMCDMSFNSIEEHLEKYHAGEELILETDENLVDESNADVIEEDEGGTDIDENMFALKDDSENGDDLETDEKTQTIEEQQCLDKEGRIYTRKVVKIDKFWIDDLNSPMTEKYVLENGKIRKISEDEAENILDKDAIIQIHQCPKCYLQFPNLDHYNKHFCDPSKVKNKFKCIHCTAVFLNYQSLTSHMKSHVSKDPSGKFKRVVTLGPYTCDICKTMFPSFKSLRLHKRMHDPIKDKAPEAPVTYSITGPIDEAREIVRHMFICSICNKTYDKEYEDVHMRSHSQEENYDCPVCNRKFYTKENLEMHVKAHSNGKKFSCSYCKKPFTTYDALQDHVTNQCQKRQYECQYCGRRFSRPHEKVKHERIHTGEKPHVCQICGKAFRVSYCLTLHLRTHSGTRPYQCTTCGKRFKSHSVYNHHLLTHSDVRAYKCPYCPKAFKTSVQLAGHKNSHIKPFACTECNRPFASLYAVRAHMETHKRENNLKFDCWMCGATYARAFALRDHIKSHHAGGENMGMDDNVLIELETNESTSQIENEMNASIGQEMEIDTSNTSFINTIWLSKDASEMIIKTSIVLPVVILGIMGNILVIFILVKNPYIRTPTNLLIGNMAAADLLSLLLHPWVILTKDNG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -