Amos026726.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Aromia moschata
Gene Symbol
-
Assembly
GCA_029963805.1
Location
JAPWTK010000780.1:39055-43872[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 21 0.039 3 9.3 1.3 1 23 154 176 154 176 0.96
2 21 0.016 1.2 10.5 4.2 1 23 185 207 185 207 0.98
3 21 4.2e-05 0.0032 18.6 1.5 1 23 216 238 216 238 0.98
4 21 0.038 2.9 9.3 0.4 1 23 243 265 243 265 0.97
5 21 0.016 1.3 10.5 0.4 1 23 274 296 274 296 0.98
6 21 0.13 10 7.6 1.8 1 23 305 327 305 327 0.98
7 21 0.0092 0.7 11.2 2.3 1 23 332 354 332 354 0.98
8 21 0.0013 0.1 13.9 1.4 1 23 359 381 359 381 0.97
9 21 0.016 1.3 10.5 0.4 1 23 390 412 390 412 0.98
10 21 5.6e-05 0.0043 18.2 0.9 1 23 421 443 421 443 0.98
11 21 0.11 8.2 7.9 0.5 1 23 448 470 448 470 0.97
12 21 0.0029 0.22 12.8 0.9 1 23 479 501 479 501 0.99
13 21 0.00037 0.029 15.6 2.3 1 23 510 532 510 532 0.98
14 21 0.00042 0.033 15.4 1.5 1 23 541 563 541 563 0.98
15 21 0.0096 0.74 11.2 0.2 1 23 572 594 572 594 0.96
16 21 0.00019 0.015 16.5 1.7 1 23 603 625 603 625 0.98
17 21 0.55 43 5.6 3.7 1 23 634 656 634 656 0.98
18 21 0.0038 0.29 12.5 0.4 1 23 684 706 684 706 0.97
19 21 0.0039 0.3 12.4 2.2 1 23 715 737 715 737 0.97
20 21 0.00027 0.021 16.0 1.1 1 23 746 768 746 768 0.99
21 21 0.0029 0.22 12.8 1.1 2 23 774 796 773 796 0.95

Sequence Information

Coding Sequence
ATGATGGAATATAATGAGTTCGAGGGATGTTTGGGCATCAAGTCAGAGGATGAGATTAAAAAGGAAGAAAATGGATTTGATGGtATGATGCTTTCTGATGAGATTGAATTAAAACCTTTTGCGGAGAAGTCTTGTAATCGTGGGACAAACCATAGGATCATTGAAAGTGGCCTTTATCAGGATGTTAAATCGGCACTAAATCAAGAAACAAGTGTGATGGGGTACCATGAACTCGAGGAATGTTTGGACATTAAGTCTGAGGGTGAGGTTAAACAGGAGGAAGATGAATGTGACGGTGACAGTCCCCATGATGATACTGAAATAAAACCCTATGTGAATAATTCTCATGATCAAACAAACCAGACGACCATCGAATGTGTCCCTTGTGAGAATGCTTCTGTAACAGAAATGGGGTATCTCAAGTACGGTGAGTTAATTGATGGTATAGAGGTAATCActtatttttgcaaattttgttcCTACGAGGCCAAATTAAAAGAGGATTTGACCAAACACATGTTGGATCACAAGGATACTTCCGAGCtaacgacttatcaatgcgAGCAGTGCTCTCATAAGACGCAGCGGAAAGGACATTTGACCAGCCACGTGTTGATTCATAAGGTTATTTCCGAGCtaacgacttatcaatgcgAGCAGTGCCCTTACAAGACGAAACGAAAGGGACAATTGACCAGCCACATGTTCGTTCATCGGGATACAACTTATCAGTGTAAACTTTGTCCTTACAAGACGAAATGGAAGGGAAATTTGTCCACGCATGCGCTGATTCACCGAGATGCttctgaggtaacgacttacCAATGCGACCTTTGTCCTTATAAGACGAAATGGAAGGGATCTTTGTCCAGACATGTCCAGATTCACCAGGATGCGTCCGAGCtaacgacttatcaatgcaACTTTTGTCTTTATAAGACGAAATGGAAGGGATATTTGTccaaacacatgttgattcatcgGAATATAACTTATAAGTGCAAGCTTTGTCCTTATAAGACGCAGTGGAAGGGACATTTGACcagacacatgttgattcatcgGAATACAACTTATAAGTGCAAACTTTGTTCTTATAAGACGAAACGAAAGGGAGATTTGTCCACGCATGCGCTGATTCACCGAGATGCttctgaggtaacgacttacCAATGCGACCTTTGTCCTTATAAGACGAAATGGAAGGGATCTTTGTCCAGGCATGTCCAGATCCACCAGGATGCGTCCGAGTTAATGACTTATCAATGCGAGCAGTGCCCTTACAAGACACAGCGGAAGGAACTTTTGACcagacacatgttgattcatcgGAATACAACTTATAAGTGCAAACTTTGTCCTTATAAGACGAAATGGAAGGCATCTTTGTCTACACACGCACTGGTTCACCGAGatgcttccgaggtaacgacttatcaatgcaAAATTTGTCCATATAAGACGAGATGGAAGGGATATTTATCCAAACATGTACGAATTCACCAGGAAGCGTCCaaggtaacgacttatcaatgcgAGCAGTGCTCTTATAAGACGGAGCAGAAGGTACATTTGACCAGCCACATGTTGATACATAAGGTTATTTCCGAGCTAACAACTTATCAATGTGAGCAGTGCACTTACAAGACACAGCGGAAGGGATATTTGCTCAGACATATGCTGATTCATCAAAATGCttctgaggtaacgacttacCAATGCGACCTTTGTCCTTATAAGACGAAACGAAAGGGGGCTTTGCCGAGACATGTGCTGCTTCACCAAAATGCTTCTGAGGCAACGACTTACCAATGTGACCTTTGTCCTTATAAGACAAAACAAAAGGTGAATCTGTCCAGACATTTTCTGACCCACCAAGATGCTTCCGAGGTCACGACTTACCACTGCAAACTCTGCTCTTTCAAGACGAAATGGAAGGAATCTTTGTCCAGACATGTCCGGATTCATCAGGATGCttctgagACAAAATGGAAGGCATCTTTGTCCACACACGCACAGGTTCACCGAGATGCTTCTGAGGTAAAGACTTACCAATGCGACCTATGTCCTTATAAGACGAAACGAAAGGGAGATATGTCCACGCATGCGCTGATTCACCAGGACGCCTCCGAAATAACGACTTACGACTGCACtatttgttcctataaggcgaaactgAAGAAACATTTAACCAGACACATTCTGATTCACCAAGACGCATCCGAGGTGCCGTCTTATCAATGCAAACTCTGTCCTTATAAGACGAAGCGGAAGGAGAATTTGTACGGTCACGCGCGTGTTCACCGTGGTAGACCTTTAGAGTGCAAGTTTTGTTCCTACACAGTTAATAGGAAAGTGGATTTCAAGACACACATGTTGAGCGAGCACAATATAGTTGATGTTCAATTCACACGAAATCCCAAAAAAAGGGTGACGGAATACCATGAGGTCGACGGATGTTTGGGCATAGAGACAGTTTATATTAAAGAGGAAACCGATGACTGTGATAggtaa
Protein Sequence
MMEYNEFEGCLGIKSEDEIKKEENGFDGMMLSDEIELKPFAEKSCNRGTNHRIIESGLYQDVKSALNQETSVMGYHELEECLDIKSEGEVKQEEDECDGDSPHDDTEIKPYVNNSHDQTNQTTIECVPCENASVTEMGYLKYGELIDGIEVITYFCKFCSYEAKLKEDLTKHMLDHKDTSELTTYQCEQCSHKTQRKGHLTSHVLIHKVISELTTYQCEQCPYKTKRKGQLTSHMFVHRDTTYQCKLCPYKTKWKGNLSTHALIHRDASEVTTYQCDLCPYKTKWKGSLSRHVQIHQDASELTTYQCNFCLYKTKWKGYLSKHMLIHRNITYKCKLCPYKTQWKGHLTRHMLIHRNTTYKCKLCSYKTKRKGDLSTHALIHRDASEVTTYQCDLCPYKTKWKGSLSRHVQIHQDASELMTYQCEQCPYKTQRKELLTRHMLIHRNTTYKCKLCPYKTKWKASLSTHALVHRDASEVTTYQCKICPYKTRWKGYLSKHVRIHQEASKVTTYQCEQCSYKTEQKVHLTSHMLIHKVISELTTYQCEQCTYKTQRKGYLLRHMLIHQNASEVTTYQCDLCPYKTKRKGALPRHVLLHQNASEATTYQCDLCPYKTKQKVNLSRHFLTHQDASEVTTYHCKLCSFKTKWKESLSRHVRIHQDASETKWKASLSTHAQVHRDASEVKTYQCDLCPYKTKRKGDMSTHALIHQDASEITTYDCTICSYKAKLKKHLTRHILIHQDASEVPSYQCKLCPYKTKRKENLYGHARVHRGRPLECKFCSYTVNRKVDFKTHMLSEHNIVDVQFTRNPKKRVTEYHEVDGCLGIETVYIKEETDDCDR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-