Amos008801.1
Basic Information
- Insect
- Aromia moschata
- Gene Symbol
- -
- Assembly
- GCA_029963805.1
- Location
- JAPWTK010000040.1:1712809-1732131[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.0053 0.41 12.0 1.5 2 23 180 202 180 202 0.95 2 20 0.065 5 8.6 0.9 1 19 313 331 313 333 0.97 3 20 2.2 1.7e+02 3.7 6.3 1 23 363 386 363 386 0.92 4 20 0.062 4.8 8.6 0.5 1 20 419 438 419 442 0.91 5 20 2.2e-05 0.0017 19.5 3.0 3 23 514 534 513 534 0.98 6 20 0.33 26 6.3 0.6 1 22 556 576 556 578 0.75 7 20 0.0008 0.061 14.6 0.4 2 23 582 603 581 603 0.96 8 20 0.00017 0.013 16.7 0.3 2 23 633 654 632 654 0.96 9 20 1.1 86 4.7 0.3 1 23 676 699 676 699 0.92 10 20 0.13 10 7.6 1.9 2 23 713 734 712 734 0.97 11 20 4.1e-05 0.0032 18.6 6.4 1 23 769 791 769 791 0.98 12 20 0.00069 0.053 14.8 1.3 2 23 803 825 802 825 0.92 13 20 0.00029 0.023 15.9 1.5 1 23 849 871 849 871 0.98 14 20 0.0017 0.13 13.5 0.5 2 23 886 908 885 908 0.95 15 20 0.012 0.9 10.9 0.3 1 23 926 948 926 948 0.94 16 20 2.3 1.8e+02 3.7 0.1 1 23 989 1012 989 1012 0.94 17 20 0.0003 0.023 15.9 0.9 2 23 1023 1044 1023 1044 0.97 18 20 0.00013 0.01 17.0 0.2 1 23 1077 1100 1077 1100 0.97 19 20 2.6e-05 0.002 19.2 1.1 1 23 1108 1130 1108 1130 0.98 20 20 0.0059 0.45 11.9 0.1 1 23 1146 1169 1146 1169 0.96
Sequence Information
- Coding Sequence
- ATGGCAGACCCCAGGCTGGGTAATTTCCAATCGTGCTGCAGACTGTGTCTCCGCGAGACGATGGACGATTTGAAGTCGGTTTTCGGCGAAACGAGAGAAGACCGCACGCTGCAGCAGAAGATTTTGCAATTCGTCGCAATCGAGATAACCACCTCTGACAAGATCTCAACGATGGTCTGTAATCAGTGCGtctcaaaaatcaataattggcACGAGTATAAGCAGACATGTTCAAGGAACCAGGAAAAACTTGAGCAGTGGTTGAACAGCTGCCCTTCGAATAACATTGCCGAtatgAGTCTTCAAATTAAAGAAGAACCTCCAGAGGAGTCAGCGGTAGATACGGAGAATACAGGGGATGAGCCCGACGATATAGTCGAGGTTCTGGTCAAAAACGAGCCCATGGACCCGCCGGATGAGCCCATGGAAGAGGAATACAACGAATTGCCACCTCCCCTTACTCCGCATCCCCTTGAAATCAACCACGATTCGGAGAATTCCCAGGATGGTGGTACACCAGGTACTGCTAATAGTAGGCAATGTAGCGTTTGCAACAAGCTATTTAGCAGCTCGGGAAATCGCAGGAAACATGAAAAACAGATACACGGGAAACACCGTCCTGGACCTGAAACAGGTGGCGCCGCCAATCAGGACAGAGAAGAAGGTTCCAGCGATTTTCAAACTGCCGATAACTTGCAGTTCAAGGAAGCTGACCAGCAGAAGATACAATTCGCTGCGGGCCTGAAGCTCCTACAGAAAAACGCCACGCCTATATCCTGCGAGCCCCTGTCGAAGATAGAGCTGAGCTACATAGAGAAATGTAAAGCGATGGTCAACATGCACAGAACCCTCGAGTGTGCCTGCCACAATGTCTTACACCCTAACCTCAAAGGTTTACTGTCGCATCTCAGGGCTCTGCGAATATGGTTCCCCGTGTTTACGTGTTACAATTGCATGATTACCTTCACTGACAGGTCTACCTTCACCCGGCACAACGTGAGGTGTCCCAAGTCGTCTTTAGAGACCTTAGTCAAGCTAAGCAACTTACGTAAACGAAGTGAAGTTAAGACAAGGCTGTATCAGAACTTTAAGTGCACCTCGTGTAAGTTTATGTACAGTTTTCACGACGATTTTTGCAAGCACGTGGATGAGGACCACGCCTTCTTTGAACCTCCCATCGTGTGTTCTTGTACCAGGCAATTCGACAATGTGGAGGACTATAAAGACCACGTATATGTCAGCTGTTTAGTTGAGTATTATTGCGATATCTGCTTTATTACGACCAAAACTCTGGAAGAGTTCCAAAAACATTCCGTCGAAGTACACGACGCCTCGGAAGGCTTCATCTTACTGCAAGACGACAACTACAAAATGCGCAAGCCGATGCACCACAAAGAGGTCTCCGATGAAAATGTATTCGTAGCTGCAAAGAGAGAAAGGAGAACCTCCATTAAAGCTCCTATTTTAGAGGTGGAGGAAGACTACGATGCTCAAAAGAAACTCGGTTATCCTCTGACACTGAGCTCCAGCTTGAAAGACTGCCCTATCTGTGGCAAGGAGTATTCCACTCACCACAACATGGTACGTCACTACAGAACCCATTTGGAGAACGGGGGTCCAGTTAAAGACGTACAAGATCCATTAGCAGGGGAGGACGATTCTGTTTATTCTTGCCCAGATTGTGGCGGCATGTACAGGACACCTGAGTGGCACAAGCACCTACAGGAGAAGCACGAGCTGAAGACTTGCGGAGAATGTGGCAAGATTTTCCAGTTCCAAAGTGAATTGGATCAACATAGGAGCGTCCATCTGAATCTCAAAGTGTATAGGGATTCCAAGACACAGTCGTACAAAACCTCTATGCTCAGCCCTGGCTCCGAAGGAGAAATTATGCTCATGTGCGAGATATGTGAGGTTATATTTACCACAAAGGAAGAACTAAAGCAGCACAAGTTGACACACGGGGAGGATGTCGTACAAAAGATGGAGGTTGCCGAGCAAAATGAAACAGGAGAAGAGGACAGATACGCCTGCAAGCCTTGCAACAAGGTGTACTCCAGTTATGGAGGCATTTGGGACCACAATAAGAAGAAGCACCCCGAGAAGAAGAGTCCTTTCGTGAACGAGTGGCCGAAGCAGTGCACCATGTGCGATAAGGTGTGCCAGACGGGAGCGGCCTACTACAGGCACAAGCAGATCCACGAGAAGGATAGGATCGTTGCGGAAGGCGCTAATGTAACTACCATGAAGACGCCTATTGTGAAGCCAAAGAGGGAAGAAGCTAGGGAAGATGATGAATCCTATCATACTTGCAAGCGCTGCTTCAAAGTATTCTCATCGAAGTACAATCTGAAGAACCACTTGAAATCGCATGGCATCAGTCCTACCAACAGAAAGATCGTCAAGAAGTGCGATATCTGCCATCAGGCCTTCACCAGTAATGAACTGTTAGCTAAGCACAAGAGTGAGGAGCACAAAGACGAAGAGGTGCCCACATTGAGCAATGAAACAGTAGACGGTTTGGACAACAAGGTGCCTTTTATATTTACCTGCGACGTGTGCGTTATGACCTTTACTACCAAAATGGCATTGAAGAAGCATAAGGAAAAACATGCACAAGAAATGAAACCTCCCGTTTCCAAACACAATCAGGTCTATTGCAAGTACTGTAAGGTGGCTTTCGATTCCATTGCGCTTCTCACCAAACACATGCACGTGGAACACGACGAAACCGCCAAACCAAAAGGCGTCAAGGCCAAAGAGAAACCGAAGCAGTTCCAGTGCGCCTTGTGCAAGAAAGTATTCTTGACCTCGTCTGCGCTGTCGACTCACACAGGCTGGCACAAGCGAAGCCCCGCCATAGGGGAGGGCGGCAAACCGGCCAAAGTACTCAAGCAAAACAAGATCATCGACAAGCTGGCCAACAGTGTGAAGGTTAAGCAGGAGCCGATCGAGCCTGCCCAGTTCCAGTGCACGACCTGCCTGGTCGAACTGCCGAACGACACCGCCCTCCAGGTGCACATCCTGGAGAAGCACCGCAGCGTCAGCGCCATCATGCTCATCCCCAGGTGCAACATATGCAATAAGGACTTCGGCACCCAGGACGAGTACGAGACGCACAAACGCCTGCACGACTTCCTGGAGCGGCAGAAGCACCACGACCAACTCTCGCTGCAGTCCATGGAGGCGATTGCGAACGACGGCACGCCAAAGCCGAAGGGCAAGGGCTTCCCGTGCAAGTACTGCAACGCAGCGTTCAGCAGGGCTGACACGCTCGGCGGCCACATGCGGCAGTACCACAAGGAGTACGTGCAGAACGAGTTCAAGTGCACTCAGTGCGACAGGGTGTTTGACAAGCAGAACTCGCTCAGCATCCACCTGAAGGTGCACGAGAAGCAGCGGTCGGCCGCGGTGAGCACCGCCTCGAAGCCGCTGTTCTCCTGCTCGATCTGCAGCATGGGCTTCGACCTGCCCAAGGATCTGAGGGCGCACACCATCAGCGCGCACCCGTTCTGA
- Protein Sequence
- MADPRLGNFQSCCRLCLRETMDDLKSVFGETREDRTLQQKILQFVAIEITTSDKISTMVCNQCVSKINNWHEYKQTCSRNQEKLEQWLNSCPSNNIADMSLQIKEEPPEESAVDTENTGDEPDDIVEVLVKNEPMDPPDEPMEEEYNELPPPLTPHPLEINHDSENSQDGGTPGTANSRQCSVCNKLFSSSGNRRKHEKQIHGKHRPGPETGGAANQDREEGSSDFQTADNLQFKEADQQKIQFAAGLKLLQKNATPISCEPLSKIELSYIEKCKAMVNMHRTLECACHNVLHPNLKGLLSHLRALRIWFPVFTCYNCMITFTDRSTFTRHNVRCPKSSLETLVKLSNLRKRSEVKTRLYQNFKCTSCKFMYSFHDDFCKHVDEDHAFFEPPIVCSCTRQFDNVEDYKDHVYVSCLVEYYCDICFITTKTLEEFQKHSVEVHDASEGFILLQDDNYKMRKPMHHKEVSDENVFVAAKRERRTSIKAPILEVEEDYDAQKKLGYPLTLSSSLKDCPICGKEYSTHHNMVRHYRTHLENGGPVKDVQDPLAGEDDSVYSCPDCGGMYRTPEWHKHLQEKHELKTCGECGKIFQFQSELDQHRSVHLNLKVYRDSKTQSYKTSMLSPGSEGEIMLMCEICEVIFTTKEELKQHKLTHGEDVVQKMEVAEQNETGEEDRYACKPCNKVYSSYGGIWDHNKKKHPEKKSPFVNEWPKQCTMCDKVCQTGAAYYRHKQIHEKDRIVAEGANVTTMKTPIVKPKREEAREDDESYHTCKRCFKVFSSKYNLKNHLKSHGISPTNRKIVKKCDICHQAFTSNELLAKHKSEEHKDEEVPTLSNETVDGLDNKVPFIFTCDVCVMTFTTKMALKKHKEKHAQEMKPPVSKHNQVYCKYCKVAFDSIALLTKHMHVEHDETAKPKGVKAKEKPKQFQCALCKKVFLTSSALSTHTGWHKRSPAIGEGGKPAKVLKQNKIIDKLANSVKVKQEPIEPAQFQCTTCLVELPNDTALQVHILEKHRSVSAIMLIPRCNICNKDFGTQDEYETHKRLHDFLERQKHHDQLSLQSMEAIANDGTPKPKGKGFPCKYCNAAFSRADTLGGHMRQYHKEYVQNEFKCTQCDRVFDKQNSLSIHLKVHEKQRSAAVSTASKPLFSCSICSMGFDLPKDLRAHTISAHPF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -