Basic Information

Insect: Aromia moschata
Gene Symbol: -
Assembly: GCA_029963805.1
Location: JAPWTK010000029.1:829831-835741[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.038 2.9 9.3 1.0 2 23 11 32 10 32 0.94

2 11 0.00028 0.021 16.0 2.5 1 23 40 62 40 62 0.98

3 11 8.2e-08 6.3e-06 27.1 0.6 1 23 67 89 67 89 0.97

4 11 0.00034 0.026 15.7 5.0 1 23 95 117 95 117 0.98

5 11 3.9e-05 0.003 18.7 1.4 1 23 123 145 123 145 0.98

6 11 0.00056 0.043 15.1 3.5 1 23 151 173 151 173 0.97

7 11 2.1e-06 0.00016 22.7 1.4 3 23 181 201 179 201 0.95

8 11 2.9e-08 2.2e-06 28.6 0.1 2 23 207 228 206 228 0.97

9 11 2.3e-05 0.0017 19.5 1.2 1 23 234 256 234 256 0.97

10 11 1.1e-05 0.00084 20.4 1.7 1 23 262 284 262 284 0.99

11 11 8.9e-06 0.00069 20.7 6.9 1 23 290 312 290 312 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.038	2.9	9.3	1.0	2	23	11	32	10	32	0.94
2	11	0.00028	0.021	16.0	2.5	1	23	40	62	40	62	0.98
3	11	8.2e-08	6.3e-06	27.1	0.6	1	23	67	89	67	89	0.97
4	11	0.00034	0.026	15.7	5.0	1	23	95	117	95	117	0.98
5	11	3.9e-05	0.003	18.7	1.4	1	23	123	145	123	145	0.98
6	11	0.00056	0.043	15.1	3.5	1	23	151	173	151	173	0.97
7	11	2.1e-06	0.00016	22.7	1.4	3	23	181	201	179	201	0.95
8	11	2.9e-08	2.2e-06	28.6	0.1	2	23	207	228	206	228	0.97
9	11	2.3e-05	0.0017	19.5	1.2	1	23	234	256	234	256	0.97
10	11	1.1e-05	0.00084	20.4	1.7	1	23	262	284	262	284	0.99
11	11	8.9e-06	0.00069	20.7	6.9	1	23	290	312	290	312	0.99

Sequence Information

Coding Sequence: ATGGGTACCCACACAGATGATAAACCATTAGAATGTAATATTTGCGCGAAGAGATTTACTCAAGGTAGAGCATTTGCTTGCCACTTGAGAATACACTCCgacaaaatcgaaaaaccattTAGATGCAAGGTATGCCAGAAGGAATTTGCCAAGGAGAGTCAATTGTCTTTTCACATGAAAAAACATGATGGATCTCCGCACATTTGTAATATATGTGGTAAAAGTTATAGTAATGCAGGAAATTTGAAGGGTCATATGCGTCTACACACTGGTGATAAACCGTACACGTGTCACATTTGTGGCAAGAAATTTGCCCAAAGCAATGCACACTCTTACCACATGAAAACGCATTTTGGTGAGAAGCCGTTCTCTTGTGATAGCTGCTCAAGAAATTTCACAACTAATGGCCAGCTGGTTAACCATCGTCGATTGCATACAGGTGAGAAACCCTTTGCCTGCACGGTGTGTTCTAAAAGGTTCACCCAGAAGTTTGCCTGTACAGTCCATATGATGACTCACACTGGAGATAAGCCTCACCTCTGCAGCATATGCGGCAAGAAATATTCTCAAAGCAATCAGCTAGCCGAGCACATGAGACTTCACAATGGAGAAATACTTCAGTGTAATGTCTGTGGCAAAGCTTATACAACCTCGGGCAACCTTGCCGCTCACATGCGCATTCACACTGGGATTAAACCCCACGTGTGCGACATCTGCAACAAGGCGTTCTATGTGCCGAACAAACTGGCCAAGCACAAACGTTCCCATACTGGTGAAAGACCTTACAGCTGTACTGAATGCTCCAAGAAGTTTGTCTCTACAGAATCGTTAAAGATCCATTCCAGAACCCATTCTGGGGAAAGGCCTTATTCGTGCCATTTCTGCAATAAGAGTTTTATCAGCAGTTCGCATCGTACAGCTCATATGAAGACGCACAATTACCGCCCGCCCGCCCGTCCGTAG
Protein Sequence: MGTHTDDKPLECNICAKRFTQGRAFACHLRIHSDKIEKPFRCKVCQKEFAKESQLSFHMKKHDGSPHICNICGKSYSNAGNLKGHMRLHTGDKPYTCHICGKKFAQSNAHSYHMKTHFGEKPFSCDSCSRNFTTNGQLVNHRRLHTGEKPFACTVCSKRFTQKFACTVHMMTHTGDKPHLCSICGKKYSQSNQLAEHMRLHNGEILQCNVCGKAYTTSGNLAAHMRIHTGIKPHVCDICNKAFYVPNKLAKHKRSHTGERPYSCTECSKKFVSTESLKIHSRTHSGERPYSCHFCNKSFISSSHRTAHMKTHNYRPPARP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01310763;
90% Identity: -
80% Identity: -