Amos020000.1
Basic Information
- Insect
- Aromia moschata
- Gene Symbol
- -
- Assembly
- GCA_029963805.1
- Location
- JAPWTK010000275.1:219623-232750[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.025 1.9 9.9 0.5 2 23 132 153 131 153 0.93 2 14 0.086 6.6 8.2 3.1 1 23 159 181 159 181 0.98 3 14 0.0006 0.046 15.0 1.3 1 23 187 209 187 209 0.91 4 14 8e-05 0.0062 17.7 3.6 1 23 215 238 215 238 0.98 5 14 0.00036 0.028 15.7 3.3 1 23 250 273 250 273 0.93 6 14 0.0035 0.27 12.5 1.3 3 23 284 304 283 304 0.98 7 14 6e-07 4.6e-05 24.4 1.2 1 23 310 332 310 332 0.98 8 14 5.1e-07 3.9e-05 24.6 0.8 1 23 338 360 338 360 0.98 9 14 0.0019 0.15 13.4 0.0 1 22 366 387 366 387 0.96 10 14 0.00079 0.061 14.6 2.6 1 23 451 474 451 474 0.97 11 14 0.00089 0.068 14.4 0.2 3 23 480 500 479 500 0.97 12 14 4.1e-07 3.2e-05 24.9 1.2 1 23 506 528 506 528 0.98 13 14 7e-05 0.0054 17.9 3.4 1 23 534 556 534 556 0.98 14 14 1.1e-06 8.1e-05 23.6 0.4 1 22 562 583 562 583 0.96
Sequence Information
- Coding Sequence
- ATGCAGTCAGAGTTAGCCATtcaGTATTTCGATCCGATAGtccttaataatttaatatacggTCCAGGAATATCAATTACCCCCATCAAACAGGAAACGTATAATTGCAATTACAGTACAGGCCCACCGAAAAACTTCAACCCCTTTAACGGTTACAACGGCTACAACCAACTCCTAAGTCATTTAGGACAGGCGGAGATGAAAAACACAATATCCCATTCTCCGGCCTTGCAAAACACGTATCCAGATGTAGGAGGCGAGTCAGCACCACGGGAAAACATATTAGACTGCTTACCCAAAAAGTCCATCAAGAGAAAGTCGGAGAAGCCCACTCCAAGAATTGGTGTCGAAAAGAACAGCCAACAAGCGCCCATCGAGCTGGACGAACCGATACACTGCGAAGTCTGTAACGAAACTTACAAGAATAATGTCGCGTTTGCGCTGCATTCGGCGAAACACAGCGAGGACGGGAAGTACACTTGTCACTTGTGCGACTACAGAAACGCATCCAAGTACCACATCGAGATGCATATCAGGGCCCACGAGGGCACCACGAAATACAAATGCGAGATCTGCGGCAAAGCATTCACGGTAAGCACCCACGCCATCGAACACAAGTACTTCCACACCGGCGAGAAACCCTTTCAGTGCGAGATTTGCGGAAAACACTTCATGTTCTCGTGGTTCCTGACCTCACATCGCCGAACCCAGCACTGGGAAATCATGACGGGCAGTCCTCTGGTGAAATATGACTGTACCATATGTAACAAGCATTACACGTCCTCCACCGGCTTGAAGAGGCACAACCTGAGCAAGCACAACGCGACGGGTGTGGACGCTTCGGTCTTGTGCGACATCTGCGGCAAGAGGCTGTCCAGCAAGGAGAAGTTGAAGTTCCATCGGAGGATCCACACCGGCTACAAACCGTTCTCTTGCGAGGTGTGCACCAAGAGCTTCTCCAGAAAGGAGCAGCTGAAAGAGCATGAGCGCGTCCACACCGGGGAGAAGCCTTTCATTTGCAAGTACTGCGGCAAGGGCTTCACCCAGAGGTCTCCTCTGAGAATACACGAGCGCACGCACACCGGGGAGCGGCCATATGTGTGCATGATATGCGGCAAGGGGTTCATCTCCAAAGGTGTCATGGACACCCATATGAAGACGTGCTCCGCGATACGCGAGGGTCGCGGGCGTCCGTCGCTCGGGGGCGGAGCTACGGGCGGCGGCGTCTTCGCGAATCCCACGCGACGTTTCGGCTTGGAATTCAGTCCCATGGTCCGCTTCGGGGTCACTTTCGAccGAAACACACTGACAGACCACTGGGACTCGACGAGCGGGGTCCCTCCGAAAACATTCGAATGCTCCATGTGCGGTAAACGGCACTCGCAGTCGAATGCTCTGAAGAAGCATTATCGCCTTGAACACGACACTGGCGCCATATGCGACGTGTGTGGTAAGAGGCTGGTCAGCCAGGAGAGGCTGACGATCCACAAGAGGATCCACTCGGGTTACAAGCCGTTCTCGTGCGGAACGTGCGATAAAGCGTTCACGCGATCCGAGCAACTGAGGCAGCACGAGCGAACGCACACAGGGGAAAAGCCTTACGCTTGCAGGCACTGCGGAAGGGGCTTCACGCAGAGTTCCTCGCGGAGGACGCACGAGCGCACGCACACTGGAGAAAAACCTTTCACTTGCCTGAAGTGCGGTAAAGCGTTTGCGTCCAAGGCCAGCTTGAATAACCACATGAGAAAGATATGTTAG
- Protein Sequence
- MQSELAIQYFDPIVLNNLIYGPGISITPIKQETYNCNYSTGPPKNFNPFNGYNGYNQLLSHLGQAEMKNTISHSPALQNTYPDVGGESAPRENILDCLPKKSIKRKSEKPTPRIGVEKNSQQAPIELDEPIHCEVCNETYKNNVAFALHSAKHSEDGKYTCHLCDYRNASKYHIEMHIRAHEGTTKYKCEICGKAFTVSTHAIEHKYFHTGEKPFQCEICGKHFMFSWFLTSHRRTQHWEIMTGSPLVKYDCTICNKHYTSSTGLKRHNLSKHNATGVDASVLCDICGKRLSSKEKLKFHRRIHTGYKPFSCEVCTKSFSRKEQLKEHERVHTGEKPFICKYCGKGFTQRSPLRIHERTHTGERPYVCMICGKGFISKGVMDTHMKTCSAIREGRGRPSLGGGATGGGVFANPTRRFGLEFSPMVRFGVTFDRNTLTDHWDSTSGVPPKTFECSMCGKRHSQSNALKKHYRLEHDTGAICDVCGKRLVSQERLTIHKRIHSGYKPFSCGTCDKAFTRSEQLRQHERTHTGEKPYACRHCGRGFTQSSSRRTHERTHTGEKPFTCLKCGKAFASKASLNNHMRKIC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -