Amos012958.1
Basic Information
- Insect
- Aromia moschata
- Gene Symbol
- -
- Assembly
- GCA_029963805.1
- Location
- JAPWTK010000089.1:991620-998827[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 24 2.5e-06 0.00019 22.5 0.2 1 23 108 131 108 131 0.95 2 24 0.13 10 7.6 0.1 1 20 155 174 155 176 0.94 3 24 6.2 4.7e+02 2.3 4.7 1 22 190 211 190 211 0.95 4 24 0.2 16 7.0 3.9 1 19 223 241 223 244 0.96 5 24 0.005 0.38 12.1 0.2 3 23 259 280 257 280 0.95 6 24 0.018 1.4 10.3 0.5 1 23 285 308 285 308 0.98 7 24 0.68 52 5.4 0.3 1 15 327 341 327 350 0.75 8 24 0.00027 0.021 16.0 1.4 1 23 360 382 360 382 0.96 9 24 2.9e-05 0.0022 19.1 0.5 3 23 390 410 389 410 0.96 10 24 6e-06 0.00046 21.3 2.8 1 23 416 439 416 439 0.97 11 24 0.0012 0.09 14.1 5.0 1 23 447 469 447 469 0.98 12 24 5e-05 0.0038 18.4 0.5 1 23 475 497 475 497 0.96 13 24 0.0011 0.087 14.1 3.6 1 23 503 526 503 526 0.96 14 24 0.038 2.9 9.3 4.7 1 23 540 562 540 562 0.96 15 24 0.00015 0.012 16.9 3.3 1 23 568 591 568 591 0.96 16 24 1.1 85 4.7 0.8 1 19 768 786 768 789 0.96 17 24 0.0011 0.085 14.1 1.6 1 23 801 823 801 823 0.97 18 24 3.6e-05 0.0028 18.8 0.5 3 23 831 851 830 851 0.96 19 24 0.00068 0.052 14.8 6.2 1 23 857 880 857 880 0.96 20 24 0.019 1.5 10.2 5.1 1 23 888 910 888 910 0.98 21 24 5.3e-06 0.00041 21.4 6.4 1 23 916 938 916 938 0.99 22 24 0.15 12 7.4 2.3 1 14 944 957 944 960 0.91 23 24 0.00033 0.025 15.8 2.0 1 23 961 983 961 983 0.98 24 24 1.1e-05 0.00086 20.4 3.4 1 23 989 1012 989 1012 0.97
Sequence Information
- Coding Sequence
- ATGAAATTGGAAAGCTACCAACAGCCAAGAAAAGGAGAGGGAAAGCTACAATATATTGCACCAGAAATAgaCTGGTTAGAACATTACCTGATATGTAGGTGTTGCATTGAACATTTAAATAATGCCTGTAGATTCAAGGCACAATGTTTAGCAGTTAGTGAAGAAACTAAAGAATTAGAATTTAAGGCACTAAATAAAGTTTTTCATGACTACAATCACCAATTAGACAATGACTACGAAATTGAAAATTGTGATATATTGAGTAATGACGAGGAAAAATATACAGATGAAAAAGAGGAAGCTAAAAACCATATTGAATGTTTCATATGCCATGATTGTGGAGAGAAGTTTGTAACAAAAGCTGAGCTCATAAAACATATTACCATTGGCCACAATGTATCTGATGATGGTTGTATAGAAAGTAGCAATAATAGACATTGTGTAAGGTATAAATCGAAAGAGCATACATGTTTAAAATGTGGTAGAGGATATGTTTTAGAGACAAGTTTAAACGAACATCTAGCAAATTGCGATGGGATAAGACGACATGCAAGATCAAAGGCTGACTACCAGTGCGAGTGCTGCAAAAAGTATTACACCaccaagaaaatattaaaagctCATAAAAGAAGGTGCGAGCTGGGATTTGAAAATAGAACTACTAATTTTCAATGTACAAACTGCAACAAGTATTATATAAGTTTAAAGACTTTGAAGGATCACTGTAAAAGAGGTTGTAAAAAAGACAACACTAACAGTATCCACGTGATATTCTGTAAGATTTGTGatgaatattttagtagtaTATTGTCCCTAAACCAGCATATTCAGTTGGAACATAAAACATCTAACTACTATTGTGATAAATGTGTAATAAATTTCGAAACTGAAGAGGATTACGAAGTTCACAAAAACACTAAACATACCTCTCAAAATCCCATTAACAAAAAACCAAGGGGTAGAGTGGCATCTAGAAGATTTACTTGTGAAATTTGCGGTCAAGAGTTTGGTTTATTGAAGGCAGTTATAGAACACTGTATCACAATCCACGGGATGGAAGAGAAGGTGGTACGACCTTATGCTTGTGATAAATGCGACAACCGTTTCCGTTCCTCCACGAACCTAATAAACCACAAGCTGTACCACGACAGAAACCGCGTTAATATATGTAGCTTTTGCGGCAAGAgctttataacaaaaaatgactTAACTGCACACGAATATACGCATTACAATCGCAGGAATTACAAGTGCGACAAATGCGAGAAAGCCTTTAAGACCAACACCAACTTACGTACACATCATTTGATCGTCCACACGGACCCGTCGTTGTGGAAATACGTCTGCCACATCTGCAACAAGCGTTTTCCTCAAAAATCCAATCATGATCAACACGTACGGAGGCACATTGGCGAAAAAAACTTTATCTGTCCCCTGTGCAAGAAGCCATTTACCAGCAAGAGTGAAATGCAGGAGCACGTCAGCTATCACTCAAACTTTAGAGCGTACAAGTGCGAGTATTGCGGGAAGGAGTATAGAAAAAAACACACATATGACGTTCACTTGACTAAAATACATGGCGTGGGCAACACAAAGATACCGATTCGAGAAAAGAAGCACGCCTGCCACATTTGTCCAAGTCGCTTCTATGATAAATTGAAACTGGCAAGGCATCTCTGCATTCATTCCGGACTTAAACCGTTCTCTTGTTACGCGTGCGAGAAGAAGTTCACGGACAAGTCATATTTGAAACATCACCTAAAGATTGTGCACAATATGGTTCACGAGACTAAAACCGAATggTTTCTTATTGCTAATAAAATGAGTAGCAGCGACCAAAGTTGCTGTGTTTGTTTGAATAATTACCTAAACTTAAACCAACTATCAAAACCCGATGAAAACAACGtgactttgttaacaaaatTGCAAACTAGCATTCCTCAAATTGAATGGCGGTCGTCATATCGAATTTGTGATCCCTGTACAAATTTGTTAAGTATAGTGCATACCTTCAGAGAGACTTGCATAAGGTCTGATATTATACGTAAACAGCAATTAGAAGCTGTACAAGACTCCAGTGAACAGAAAGTAGAAGCAGAATATGTTAAATATGAGGACATCAAAGAAAGCTTTGTCGAAAACGATTTTGATAACGACGCAAATGATGATGACGACGACGTCTTTGAGGACAAGGTTGATGATTCCAATTATGTAGAAGATGTTAAAGACATTAAGCTTAAAATCAAGTTTAGTGTGTCAGAAGACACATCCCAACCAAAAAGGAAACGAAAAGTACTCAGGTTCCAATGTGAAAAATGCCCAAACAATTACGTTTCCAGTACAGTACTAGTGAAGCACTGTGTGCAGGAGCATGGGATGGAAAGTAAAAATGTACGTCCCTTTGCGTGTACCAGATGCAAGAGCCGGTTCGGTAACTCATCGAATCTCTTGCAACACATAAAATATCACGATGCCGTCAGGTCTAACATGTGCACATACTGTGGGAAAGGTTTTATTACAAAAACCGATCTAAATATACATGAAAAGCAGCACTTAAACATGAGAGAGTATAAGTGTGAGACTTGTACCAAATGTTTTAATACTCATAAAGATTTAAGGTCACATAAGCTCGTTGTACACACTGATCCGCAATTGTGGAAGTACTTCTGTGagtattgcaataaaaaattcccCATAAAGTCCAATTACGATTGTCACATGCGACGGCACACGGGCGATAAGAAATTCGAGTGTCACCTCTGCGACAAGAGGTTTACGGACAAGTGCGTGTTGCAGCGACATATGCGTACCCACTCCAACGTTAGGGACTTCAAATGCTCACACTGCAACAAGGAGTACAAGGACAAGAGGGAACGTAAATACATATGTCACATATGCCCAAAGGCCTACTATGCGAAGAATAAGCTTACCAGGCATCTGTATACGCATTCGGGTGAAAAGCCGTTCTTTTGCACGATATGCGACAAGAAGTTCAACGACAAATCTTACGTTAAGCAGCACATGAAGAAATCTCATAATGTAGATACTGATGCagataaataa
- Protein Sequence
- MKLESYQQPRKGEGKLQYIAPEIDWLEHYLICRCCIEHLNNACRFKAQCLAVSEETKELEFKALNKVFHDYNHQLDNDYEIENCDILSNDEEKYTDEKEEAKNHIECFICHDCGEKFVTKAELIKHITIGHNVSDDGCIESSNNRHCVRYKSKEHTCLKCGRGYVLETSLNEHLANCDGIRRHARSKADYQCECCKKYYTTKKILKAHKRRCELGFENRTTNFQCTNCNKYYISLKTLKDHCKRGCKKDNTNSIHVIFCKICDEYFSSILSLNQHIQLEHKTSNYYCDKCVINFETEEDYEVHKNTKHTSQNPINKKPRGRVASRRFTCEICGQEFGLLKAVIEHCITIHGMEEKVVRPYACDKCDNRFRSSTNLINHKLYHDRNRVNICSFCGKSFITKNDLTAHEYTHYNRRNYKCDKCEKAFKTNTNLRTHHLIVHTDPSLWKYVCHICNKRFPQKSNHDQHVRRHIGEKNFICPLCKKPFTSKSEMQEHVSYHSNFRAYKCEYCGKEYRKKHTYDVHLTKIHGVGNTKIPIREKKHACHICPSRFYDKLKLARHLCIHSGLKPFSCYACEKKFTDKSYLKHHLKIVHNMVHETKTEWFLIANKMSSSDQSCCVCLNNYLNLNQLSKPDENNVTLLTKLQTSIPQIEWRSSYRICDPCTNLLSIVHTFRETCIRSDIIRKQQLEAVQDSSEQKVEAEYVKYEDIKESFVENDFDNDANDDDDDVFEDKVDDSNYVEDVKDIKLKIKFSVSEDTSQPKRKRKVLRFQCEKCPNNYVSSTVLVKHCVQEHGMESKNVRPFACTRCKSRFGNSSNLLQHIKYHDAVRSNMCTYCGKGFITKTDLNIHEKQHLNMREYKCETCTKCFNTHKDLRSHKLVVHTDPQLWKYFCEYCNKKFPIKSNYDCHMRRHTGDKKFECHLCDKRFTDKCVLQRHMRTHSNVRDFKCSHCNKEYKDKRERKYICHICPKAYYAKNKLTRHLYTHSGEKPFFCTICDKKFNDKSYVKQHMKKSHNVDTDADK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -