Amos019988.1
Basic Information
- Insect
- Aromia moschata
- Gene Symbol
- ZEB2
- Assembly
- GCA_029963805.1
- Location
- JAPWTK010000275.1:58454-67859[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.31 24 6.4 2.9 1 23 26 48 26 48 0.93 2 20 0.07 5.4 8.5 0.2 1 23 52 74 52 74 0.96 3 20 0.043 3.3 9.1 0.1 1 23 80 103 80 103 0.94 4 20 8.5e-05 0.0065 17.6 5.2 1 23 109 131 109 131 0.97 5 20 0.00011 0.0085 17.3 0.6 1 23 137 160 137 160 0.95 6 20 0.00015 0.011 16.9 0.2 2 20 172 190 171 191 0.96 7 20 0.077 5.9 8.3 0.5 10 23 192 205 190 205 0.95 8 20 3e-05 0.0023 19.1 0.9 1 23 211 233 211 233 0.98 9 20 1.4e-06 0.00011 23.2 0.4 1 23 239 261 239 261 0.99 10 20 0.16 12 7.3 2.1 2 23 320 341 319 342 0.93 11 20 0.051 3.9 8.9 0.2 1 23 361 384 361 384 0.97 12 20 0.00035 0.027 15.7 0.7 1 23 388 410 388 410 0.98 13 20 0.00046 0.035 15.3 2.1 1 23 416 439 416 439 0.98 14 20 0.0037 0.29 12.5 0.4 1 23 445 467 445 467 0.88 15 20 0.0013 0.098 13.9 0.5 1 23 473 496 473 496 0.96 16 20 0.00047 0.036 15.3 0.7 2 23 508 530 507 530 0.96 17 20 2.4e-05 0.0019 19.4 1.0 3 23 544 564 542 564 0.96 18 20 1.9e-05 0.0015 19.7 1.5 1 23 570 592 570 592 0.97 19 20 3.5e-07 2.7e-05 25.2 0.5 1 23 598 620 598 620 0.98 20 20 0.019 1.5 10.2 0.1 1 21 626 646 626 647 0.96
Sequence Information
- Coding Sequence
- ATGCACGAGGACACCGAAGACCTTGCAAGCAGCGAAGAAATCGACAAATTCACTTACGATGATGAATACGATTTTTACACTTGCAACAATTGCTCAGCCGAATTTCAAACTAAGAAAGAGATAGAGAAACATTGCGAGACCCACGAGGAGAAATACGTATGTCACGTTTGCAATGAAACAGTCATCGGAGCATTGGACTTTTCGTCTCACCtacaaaaccatcgggaagacAAAAACTTCCCTTGTCCGTTGTGTTCGCACATCACCAGCAGAAAGGCGGCCATGCTGATTCACATCGGGCGCGTACATTTCAGAGAGTACGATTTTCAGTGCAAATCGTGCGGAAAATGCTTCTACGACGCCTCCACCTTTAAGGAACACCAGAACTTCCACATGGGCGCCGAGCCGTTCGTGTGCGTCGTGTGCAACAAGACCTTTCCGTATTCGCGCTATCTGATCAACCACCAGGTCCGCAACCACAGGGTGCGCGTCTTGGACAAGGACTCGAAGACCCAGTGCCACATGTGCCCGAGGATTTTCGCGAGGAACGAGACTCTGGTGAAACACATGGGATTCTCCAGAAAGGACAAACTCAAAATTCACTACAGGAAGCACACCGGAGAGAAGCCTTATTCGTGCGTCTACTGCAGCAAGAGCTTCATCAAGAAGGACTACCTCATTATGCACGAGAGGGTGCATAATGGCGAAAAACCTTATGTTTGTGAGATTTGCGGCAAATGCTTTAACCAAGGAGCTCCTTTGAGGATACACATGCGGAGCCATACCGGAGAGCGTCCaaaaaaatcacccGAAAAAGTACTGCCCgttaagaagaaaataaaaatagaaatcgACGAGGAATACACTCCGCCGGGCTACAAGAAGAAAAGAAATCCGCTTCCACATTCGAGCAAGATGAagcagaagaaaataaaaaagcaagaacaCAAAATATGGACGTGCAGAAGGTGTCTCGTAGAATTCGACACTAGAAAAGACCTTACCGAACACACAAAGCTTCACCATCCGGAAGAACCGAAGGATCAGCACACGTTCAAATACGACGAAGAGCAGGATCTGTACACCTGCAGCACGTGTTCCGCGGAGTACCAAACGAAGAAAGAGGTGGAAGACCACATCATCAAAATCCACGAGGAACTGTACACGTGCGAGGTTTGCAAGCAGACCTCGAAGAAAGCCTACAGCTTCGCCGTGCACATGAGGGGCCACAGCGGCGACGACAACTACACATGCCCCTTGTGCAGCTACAGCACTCCGCGAAGGACTTGCCTTCAGACCCACATAAACAGGGTGCATTACCACAAGTTCTACTACACCTGCCCCACCTGCGGCAAGGGTTTCAACGACTCGGTCATCTTCAAGGAGCACAACAACGAGCACCTCGGCATAAAGCCGTTTGTCTGCGTCGTCTGCGGCAAAGAGTTCGTGTACTCCAGGTACATGCTGATCCACCAGACGAGATACCACACGGTTCACATCGAGGGCACGCTCCACAAGACCCAGTGCAGCATCTGCCTGAAGGTGTTCAGCAAGGTGGCCACCCTCCTCAAGCACATCACGACGAAGCACAGCAACGCGAACGACGAGAAGCCCGAAAAGCGCCACCTGTGCGACATGTGCGGCAAAGGCTTCGGCACCTCCGACAAGCTGAAGATCCACTACCGGATACACACGGGCGACAAGCCGTTCGCCTGCCGCTACTGCGACAAGCGCTTCACCAAGAAGGACTACCTGGTGATGCACGAGAGGGTGCACACCGGCGAAAAGCCCTACCCCTGCGAGTACTGCGGCAAGTGCTTCAACCAGGCGGCCTCGCTGAGGATCCACGTGCGCGGTCACACGGGCGAGCGGCCGTACGTTTGCCAGTTCTGCAACGGGGGCTACATCTCCCGCGGATCCCTGAACTTGCACATGAAGATCTGCAACGGGATCACTGCCTAA
- Protein Sequence
- MHEDTEDLASSEEIDKFTYDDEYDFYTCNNCSAEFQTKKEIEKHCETHEEKYVCHVCNETVIGALDFSSHLQNHREDKNFPCPLCSHITSRKAAMLIHIGRVHFREYDFQCKSCGKCFYDASTFKEHQNFHMGAEPFVCVVCNKTFPYSRYLINHQVRNHRVRVLDKDSKTQCHMCPRIFARNETLVKHMGFSRKDKLKIHYRKHTGEKPYSCVYCSKSFIKKDYLIMHERVHNGEKPYVCEICGKCFNQGAPLRIHMRSHTGERPKKSPEKVLPVKKKIKIEIDEEYTPPGYKKKRNPLPHSSKMKQKKIKKQEHKIWTCRRCLVEFDTRKDLTEHTKLHHPEEPKDQHTFKYDEEQDLYTCSTCSAEYQTKKEVEDHIIKIHEELYTCEVCKQTSKKAYSFAVHMRGHSGDDNYTCPLCSYSTPRRTCLQTHINRVHYHKFYYTCPTCGKGFNDSVIFKEHNNEHLGIKPFVCVVCGKEFVYSRYMLIHQTRYHTVHIEGTLHKTQCSICLKVFSKVATLLKHITTKHSNANDEKPEKRHLCDMCGKGFGTSDKLKIHYRIHTGDKPFACRYCDKRFTKKDYLVMHERVHTGEKPYPCEYCGKCFNQAASLRIHVRGHTGERPYVCQFCNGGYISRGSLNLHMKICNGITA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -