Amos029279.1
Basic Information
- Insect
- Aromia moschata
- Gene Symbol
- -
- Assembly
- GCA_029963805.1
- Location
- JAPWTK010001493.1:3355-3954[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 6.9e-07 0.0002 21.8 0.0 1 43 15 57 15 59 0.91 2 2 6.2 1.8e+03 -0.5 0.1 12 23 139 151 137 153 0.78
Sequence Information
- Coding Sequence
- ATGTCTAGATATAAGAGAAAGACTGATAGAAAATTGATATTCACGGAAGAAAATTTGGCTGAAGCAAGACGAAAGATTTCTGAAGGTGTAAGTCAAAGAAGGGTAGCTTCAGGAATGGGTATAGGGGAATCTACTTTACGAAAGAGATTGAAGAGCGGGAACATTCCAACGTCATTAGGGCGCTATAAAACTACATTTTCAAAAGAACAAGAACAGGAATTAGCGCAACAAGTGAAAGATTTAGACGAGAGGTTCTATGGTTTGACAAAAAAGGGCTTGCAAATTGCGGCTTACAAGTTTGCGACTTTAAATAATATACCAAACTCTTTTAATAAAGATAAGAGGATGGCTGGTGAAACGTGGATTGTTGGATTTTGTCGACGACATAATATTACTTTAAGACAGCCTGAAAAGTGTTCAATGGGTAGGGTTATGGGTTTCAACAAGGCACAGGTGCAacgattttttgacaatttaaaaacattgtatgaaaagaaaaatatacggCACAGTGTATATTTAACATGGACGAAACAGGTCTTTCCACTGTTCCAAACAAATTACCGAAGGGTTTGGCAACAAAGGGCAAAAAACTTGTAA
- Protein Sequence
- MSRYKRKTDRKLIFTEENLAEARRKISEGVSQRRVASGMGIGESTLRKRLKSGNIPTSLGRYKTTFSKEQEQELAQQVKDLDERFYGLTKKGLQIAAYKFATLNNIPNSFNKDKRMAGETWIVGFCRRHNITLRQPEKCSMGRVMGFNKAQVQRFFDNLKTLYEKKNIRHSVYLTWTKQVFPLFQTNYRRVWQQRAKNL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -