Amos013454.1
Basic Information
- Insect
- Aromia moschata
- Gene Symbol
- clz9
- Assembly
- GCA_029963805.1
- Location
- JAPWTK010000098.1:772436-774139[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 5e-11 1.4e-08 35.0 0.1 1 40 17 56 17 59 0.93
Sequence Information
- Coding Sequence
- ATGAGGACCTACCAAAAAATCCCTGGCAGTCGGCCATATGCCAACTATACTAGAGAAAATTTAGAAAGAGCAGTGGCGGCCATTCGAAGCGGTATGAGCAAAAAACTAGCTGCTCAAACCTACAGGATACCACGCAGCACTCTAGTCAATAGATGCCTTGGAAGGCACAAGAAGTCTGTTGGACATCCGACAATCCTTAGTAAAGAAGAAGAGCAGTTAATTTCGAGAACGTTGGGAATTGTGGCTGAATGGGGATTTCCTCTCACAAAGGCAGATATAAAAgctgtcattaaaaaatacctCGACAAAAGGGGTATTGTGATCCCTATATTAAAAGAGAACAACCCTGGAGATGATATGGTTAATGCATTCATCCAACGAAACAATTTATCGGTTAGAATAGCCTCCAATATCAAAAGATCCCGTTCATCAGTGGACCAAGAAGatgttttgaagttttttgaaaacattaccCCTGCATTATTAGATTCCAGTGGGGATCACATATACAATTATGATGAAACGAACATCACTGACGACCCTGGTGCTAGAAAGGTTATTGTCCCACGAAACGTCAAAAGGGTGGAACGTATCCAAAATCATTCCAGGACAGCCATTAGCATAATGGTATGCGGAAGCGCCAGTGGAGTCTTGTTGCCACCCATGGTGGTATATAAGGCtaataatatttatgaaaactGGTGTAACGGAGGCCCACCAGGGACTGTTTACAAAAATAGTACAAGTGGCTGGTTTGACGCCAACTTGTTTGAGATatggtttaaagaaattttactTGTCCTAAGAACAAGAGAACCTGGAAAACGAGTGATCCTTGTAGGAGACAACTTAGCCAGCCATTTTGCTCCAAGTGTCGTACAGGCAGCACAAGAAAATGACATATATATGTGCCCATTTCCTGCCAATGCGACGCACTTAATGCAACCATTGGATGTATCGGTATTCGGGCCAATGAAAAAGAAATGGCGAGCAATTCTCGAAACATGGCGAAAAGAAAGCCGATATCCTGGGTCAATTCCAAAAGAACAGTTTCCCATATTACTCAACAGACTTTGGCTGCATATTAGTGACACAGTGTCGCAAAATTTGATTTCAGGTTTTCGCACCACCGGCCTATATCCATGTAATCCACAAGAGGTTTTAAGAAAACTTCCTGATGCTGCTGTACAGGAAGAACAAATTGGGAGAACATTGGATGCAAGTTTAGTAGAGTTACTAAAAGAACACCGAGGAGTTGCAGCTCctgagaaaaaaaggaaaaggggaATGAAAATAGAGGCAGGACAAAATGTTGCAGCCATAATCTCCTCAGAAGTAGACGGGAGCAACATGAATAATGTCGATAATATCAATCATGATACTACTCAACCATCCACCTCTAAAGGAAATCCGAGGAGCCAGAAAAATAAAGCAAAGTTGGGTGTTAAAGATAAAGAAAATCTCCCCCCAAGAAAATCATCGCGAAAAAAAGATGATTCAAGCAAATGCGGCATCTGTAAGTGTTTGTGGGAAAAGTACAGGCATCCAGTTGAATGGATAAAATGCTGCCAATGCCAGAAATGGATTTGTGGCATGTGCAATAACGATAGCAAGGATCCCTATTTTATTTGTGCTACATGTGAAGACAGTTCAGATGAAGATGCCTACCCCACAAACGAAGACGACGAATATGTGCCTGATTAA
- Protein Sequence
- MRTYQKIPGSRPYANYTRENLERAVAAIRSGMSKKLAAQTYRIPRSTLVNRCLGRHKKSVGHPTILSKEEEQLISRTLGIVAEWGFPLTKADIKAVIKKYLDKRGIVIPILKENNPGDDMVNAFIQRNNLSVRIASNIKRSRSSVDQEDVLKFFENITPALLDSSGDHIYNYDETNITDDPGARKVIVPRNVKRVERIQNHSRTAISIMVCGSASGVLLPPMVVYKANNIYENWCNGGPPGTVYKNSTSGWFDANLFEIWFKEILLVLRTREPGKRVILVGDNLASHFAPSVVQAAQENDIYMCPFPANATHLMQPLDVSVFGPMKKKWRAILETWRKESRYPGSIPKEQFPILLNRLWLHISDTVSQNLISGFRTTGLYPCNPQEVLRKLPDAAVQEEQIGRTLDASLVELLKEHRGVAAPEKKRKRGMKIEAGQNVAAIISSEVDGSNMNNVDNINHDTTQPSTSKGNPRSQKNKAKLGVKDKENLPPRKSSRKKDDSSKCGICKCLWEKYRHPVEWIKCCQCQKWICGMCNNDSKDPYFICATCEDSSDEDAYPTNEDDEYVPD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01242220; iTF_01242754; iTF_01242179; iTF_01187022; iTF_01187001; iTF_01187002; iTF_01187003; iTF_01187004; iTF_01187005;
- 90% Identity
- -
- 80% Identity
- -