Acus049714.1
Basic Information
- Insect
- Arma custos
- Gene Symbol
- -
- Assembly
- GCA_037127475.1
- Location
- CM073762.1:108870209-108871888[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.0033 0.71 12.4 4.8 2 23 12 33 11 34 0.94 2 19 0.22 48 6.7 9.7 1 23 40 63 40 63 0.95 3 19 0.043 9.2 9.0 11.7 1 23 69 91 69 92 0.94 4 19 0.00055 0.12 14.9 7.5 1 23 98 120 98 121 0.95 5 19 0.0083 1.8 11.2 9.4 1 23 127 150 127 150 0.95 6 19 0.86 1.9e+02 4.8 10.4 1 23 156 178 156 179 0.94 7 19 0.31 67 6.2 11.7 1 23 185 208 185 208 0.94 8 19 0.069 15 8.3 12.4 1 23 214 236 214 237 0.94 9 19 0.31 67 6.2 4.5 3 23 245 266 243 266 0.94 10 19 0.29 63 6.3 11.8 1 23 272 295 272 295 0.94 11 19 0.63 1.4e+02 5.3 14.1 1 23 301 323 301 324 0.94 12 19 0.069 15 8.3 12.4 1 23 330 352 330 353 0.94 13 19 0.25 55 6.5 12.2 1 23 359 381 359 382 0.93 14 19 0.25 55 6.5 12.2 1 23 388 410 388 411 0.93 15 19 0.11 24 7.7 9.9 1 23 417 440 417 440 0.92 16 19 0.62 1.3e+02 5.3 10.8 1 23 446 468 446 469 0.94 17 19 0.033 7.1 9.3 11.5 1 23 475 497 475 498 0.94 18 19 0.0088 1.9 11.1 9.3 1 23 504 527 504 527 0.95 19 19 1.7 3.8e+02 3.9 5.2 1 23 533 556 533 556 0.94
Sequence Information
- Coding Sequence
- atgaaaacCTGTCATGAAGGTAAGAAGCCTCTTCAAtgccctcactgtgattataagtgtgttATATCTCAGCAGTTGAAGAATCATATCATTCGCCATCATACaattgagaagcctcatcaatgttctCATTGTAATTTTAAGTGTGTTAGATCATCAGTGTTGAAGAATCATATCTCACACCGCCATACACTTGAAAAGCCTCATCACTGtactcattgtgattataagtgtgttACATCTCAACAGTTAAAGAATCATATCATTCGCCACCATACACTTGAGATGCCTCATCaatgttctcattgtgattataactGTGTTACATCAGCAGAATTGAAGAGGCATATTATTCGCCATCATACACTTGTAAAGTCTCATCACTGtactcattgtgattataagtgtgttACATCAACAGATTTGAAGAGGCATATCATTCGCCGTCATACAATTGAGATGCCTCATCACTGtactcattgtgattataagtgtgcTTTGTCTGGAGATTTGAAGACTCATACCATACGCCATCATGCagttgagaagcctcatcactgttctcattgtgattataagtgtgttACATCTCAACAGTTGAAGAATCATATCTCACACCGCCATACACTTGAAAAGCCTCATCACTGtactcattgtgattataagtgtgttACGTCTCAACAGTTGAAGAATCATATCTCACGCCACCATACACTTGTAAAGTCTCATCTctgttctcattgtgattataagtgtgttGCATCAACAGATTTGAAGGGGCATATCATTCGCCGTCATACAATTGAGATGCCTCATCACTGtactcattgtgattataagtgtgtAACATCTCAACAGTTGAAGAATCATATCTCACACCGCCATACACTTGAAAAGCCTCATCACTGtactcattgtgattataagtgtgtAACATCTCAACAGTTGAAGAATCATATCTCACACCACCATACACTTGTAAAGCCTCATCACTGtactcattgtgattataagtgtgtAACATCTCAACAGTTGAAGAATCATATCTCACGCCACCATTCACTTGAAAAGCCTCATCACTGtactcattgtgattataagtgtgttACATCTCAACAGTTGAAGAATCATATCTCATTCCACCATACACTTGAAAAGCCTCATCACTGtactcattgtgattataagtgtgttACATCTCAACAGTTGAAGAATCATATCTCATTCCACCATACACTTGAAAAGCCTCATCACTGtactcattgtgattataagtgtgttACATCTCAACAGTTGAAGAATCATATCTCATTCCGCCATACACTTGTAAAGCCTCATCACTGtactcattgtgattataagtgtgttATATCTCAACAGTTGAAGAATCATATCATTCGCCACCATACAATTGAGATGCCTCATCACTGtactcattgtgattataagtgtgttACATCTAAAGAGTTGAAGAATCATATCATTCGCCACCATACacttgagaagcctcatcactgttctcattgtgattataagtgtgttACATCAACAGATTTGAAGAGGCATATCATTCGCCGTCATACGaatgagaagcctcatcactgttctcattgtgattataagggTGCCTGGTCTAATGATTTGAAAAAGCATATCAACAACCGTCATACAATTGAGTAA
- Protein Sequence
- MKTCHEGKKPLQCPHCDYKCVISQQLKNHIIRHHTIEKPHQCSHCNFKCVRSSVLKNHISHRHTLEKPHHCTHCDYKCVTSQQLKNHIIRHHTLEMPHQCSHCDYNCVTSAELKRHIIRHHTLVKSHHCTHCDYKCVTSTDLKRHIIRRHTIEMPHHCTHCDYKCALSGDLKTHTIRHHAVEKPHHCSHCDYKCVTSQQLKNHISHRHTLEKPHHCTHCDYKCVTSQQLKNHISRHHTLVKSHLCSHCDYKCVASTDLKGHIIRRHTIEMPHHCTHCDYKCVTSQQLKNHISHRHTLEKPHHCTHCDYKCVTSQQLKNHISHHHTLVKPHHCTHCDYKCVTSQQLKNHISRHHSLEKPHHCTHCDYKCVTSQQLKNHISFHHTLEKPHHCTHCDYKCVTSQQLKNHISFHHTLEKPHHCTHCDYKCVTSQQLKNHISFRHTLVKPHHCTHCDYKCVISQQLKNHIIRHHTIEMPHHCTHCDYKCVTSKELKNHIIRHHTLEKPHHCSHCDYKCVTSTDLKRHIIRRHTNEKPHHCSHCDYKGAWSNDLKKHINNRHTIE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -