Acus049728.1
Basic Information
- Insect
- Arma custos
- Gene Symbol
- -
- Assembly
- GCA_037127475.1
- Location
- CM073762.1:108956115-108961897[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 25 0.045 9.6 8.9 6.6 2 23 12 33 11 34 0.94 2 25 1.7 3.7e+02 3.9 11.9 1 23 40 63 40 63 0.95 3 25 0.06 13 8.5 12.0 1 23 69 91 69 92 0.94 4 25 0.00023 0.05 16.1 4.8 1 23 98 120 98 121 0.95 5 25 2.1 4.6e+02 3.6 10.0 1 23 127 149 127 150 0.94 6 25 0.4 87 5.9 9.9 1 23 156 179 156 179 0.95 7 25 0.058 13 8.5 8.6 1 23 185 208 185 208 0.96 8 25 0.065 14 8.4 11.5 1 23 214 236 214 237 0.94 9 25 2.1 4.6e+02 3.6 10.0 1 23 243 265 243 266 0.94 10 25 0.96 2.1e+02 4.7 10.2 1 23 272 294 272 295 0.94 11 25 0.2 44 6.8 9.3 1 23 301 324 301 324 0.95 12 25 0.12 26 7.5 11.2 1 23 330 352 330 353 0.94 13 25 0.062 13 8.4 11.7 1 23 359 381 359 382 0.94 14 25 0.014 3 10.5 9.2 1 23 388 411 388 411 0.95 15 25 0.14 30 7.3 2.4 1 21 417 437 417 438 0.94 16 25 2 4.3e+02 3.7 0.8 2 22 452 472 451 472 0.92 17 25 0.0048 1 11.9 4.8 2 23 481 502 480 503 0.94 18 25 0.045 9.8 8.9 4.8 1 20 509 528 509 529 0.96 19 25 0.06 13 8.5 12.0 1 23 538 560 538 561 0.94 20 25 0.0029 0.63 12.6 5.9 1 23 567 589 567 590 0.95 21 25 0.0097 2.1 11.0 7.8 1 23 596 619 596 619 0.96 22 25 0.018 4 10.1 6.2 1 23 654 677 654 677 0.96 23 25 0.4 87 5.9 9.9 1 23 683 706 683 706 0.95 24 25 0.024 5.1 9.8 6.9 1 23 712 735 712 735 0.96 25 25 0.0062 1.3 11.6 7.5 1 23 741 764 741 764 0.95
Sequence Information
- Coding Sequence
- atgaaaacCTGTCATGAAGGTAAGAAGCCTCTTCAAtgccctcactgtgattataagtgtgttATATCTCAGCAGTTGAAGAATCATATAATTCACCATCATACAAtggagaagcctcatcaatgttctCATTGTAATTTTAAGTGTGTTAGATCATCAGTGTTGAAGAATCATATCTCACACTGCCATACACTTGTAAAGCCTCATCACTGtactcattgtgattataagtgtgttACATCTCGACAGTTGAAGAATCATATCATTCGCCATCATACACTTGAGAAGCCTTATCactgtcctcattgtgattataagagTGTTACATCAGCAGAGTTGAAGAAGCATATTATTCGCCATCATACacttgagaagcctcatcactgttctcattgtgattataagtgtgcTTTGTCTGGAGATTTGAAGAATCATACCGTACGCCATCATGCagttgagaagcctcatcactgttctcattgtgattataaatgtgCATTGTCTAAAGATTTGAAAAAGCATATCACACGCCGTCATACggttgagaagcctcatcaatgttctcattgtgattataagtgcGTTACACTAACAGAGCTGAAAATGCATATCATGCAGTGTCATACGATTGACAAGCCTCATCactgttctcattgtgattataagtgtgttACATCTCAACAGTTGAAAAATCATATCATTCGCCACCATACacttgagaagcctcatcactgttctcattgtgattataagtgtgcTTTGTCTGGAGATTTGAAGAATCATACCGTACGCCATCATGCagttgagaagcctcatcactgttctcattgtgattataagtgcGCTTTGTCTGGAGATTTGAAAAATCATACCATACGCCATCATGCagttgagaagcctcatcactgttctcattgtgattataagtgcGTTACACTAACAGAGTTGAAAAGTCATATCACACGCCGTCATACGATTGACAAGCCTCATCactgttctcattgtgattataaatgtgTCACTTCTGAAGATTTGAAGAATCATACCATACGCCACCATACAATTGAGATGCCTCATCACTGtactcattgtgattataagtgtgttACATCTCAACAGTTGAAGAATCATATCATTCGCCACCATACacttgagaagcctcatcactgttctcattgtgattataagtgtgttACATCAACAGAGTTGAAGAGGCATATCATTCGCCGTCATACGaatgagaagcctcatcactgttctcattgtgattataagggTGCTTTGTCTAATGATTTGAAAAAGCATATCAACAACCGTATCGACGATAGTTGCGAAAAAGTTGAAAAGAAATTACAATGTTATCATTGTGACTTTAAATCCGAAAATCACCCAggcattaaaaaacatataataaccTGTGATGTAGGTAAGAAGCCTCTTCAAtgccctcactgtgattataagtgtgttATATCTCAACAGTTAAAGAATCATATCATTCGCCATCATACaattgagaagcctcatcaatgttctCATTGTAATTTTAAGTGTGTTAGATCATCAGTGTTGAAGAATCATATCTCATGCCGCCATACacttgagaagcctcatcactgtactcattgtgattataagtgtgttACATCTCGACAGTTGAAGAATCATATCATTCGCCATCATACACTTGAGAAGCCTTATCactgtcctcattgtgattataagagTGTTACATCAGCAGAGTTCAAGAATCATATCTCACGCCACCATACacttgagaagcctcatcactgtactcattgtgattataagtgtgttACATCAGCAGAGTTGAAGATCCATATCATGCGACGTCATACACTTAATAAGCCTCATCACTGTTCTCAATGTGATTATAAGTGTGCCTGGTCTAACGATTTGAAAAAGCATATCACACACCGTCATACgattgagaagcctcatcaatgttctaattgtaattttaagtgTGTTACATCAACAGAGTTGAAGAATCATATTACACGCCGTCATACACTTGAGAAGTCTCATCACTgctctcattgtgattataagtgtgcTTTGTCTAAAGATTTGAAAAAGCATATCACACGCCGTCATATgattgagaagcctcatcaatgttttcattgtgattataagtgtgttACACTAACAGAGTTGAAAAGTCATATCATACGCCGTCATACGATggagaagcctcatcactgtactcattgtgattataagtgcGTTACATCAGCAGAGTTGAAGATTCATATCAGGCTACGTCATACAATTGAGAGGCCTTATTAA
- Protein Sequence
- MKTCHEGKKPLQCPHCDYKCVISQQLKNHIIHHHTMEKPHQCSHCNFKCVRSSVLKNHISHCHTLVKPHHCTHCDYKCVTSRQLKNHIIRHHTLEKPYHCPHCDYKSVTSAELKKHIIRHHTLEKPHHCSHCDYKCALSGDLKNHTVRHHAVEKPHHCSHCDYKCALSKDLKKHITRRHTVEKPHQCSHCDYKCVTLTELKMHIMQCHTIDKPHHCSHCDYKCVTSQQLKNHIIRHHTLEKPHHCSHCDYKCALSGDLKNHTVRHHAVEKPHHCSHCDYKCALSGDLKNHTIRHHAVEKPHHCSHCDYKCVTLTELKSHITRRHTIDKPHHCSHCDYKCVTSEDLKNHTIRHHTIEMPHHCTHCDYKCVTSQQLKNHIIRHHTLEKPHHCSHCDYKCVTSTELKRHIIRRHTNEKPHHCSHCDYKGALSNDLKKHINNRIDDSCEKVEKKLQCYHCDFKSENHPGIKKHIITCDVGKKPLQCPHCDYKCVISQQLKNHIIRHHTIEKPHQCSHCNFKCVRSSVLKNHISCRHTLEKPHHCTHCDYKCVTSRQLKNHIIRHHTLEKPYHCPHCDYKSVTSAEFKNHISRHHTLEKPHHCTHCDYKCVTSAELKIHIMRRHTLNKPHHCSQCDYKCAWSNDLKKHITHRHTIEKPHQCSNCNFKCVTSTELKNHITRRHTLEKSHHCSHCDYKCALSKDLKKHITRRHMIEKPHQCFHCDYKCVTLTELKSHIIRRHTMEKPHHCTHCDYKCVTSAELKIHIRLRHTIERPY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -