Acus049700.1
Basic Information
- Insect
- Arma custos
- Gene Symbol
- -
- Assembly
- GCA_037127475.1
- Location
- CM073762.1:108801259-108812362[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.017 3.6 10.2 4.5 1 20 377 396 377 397 0.96 2 23 0.0084 1.8 11.2 8.5 1 23 406 429 406 429 0.96 3 23 0.077 17 8.1 9.5 1 23 435 458 435 458 0.95 4 23 0.04 8.6 9.0 6.8 1 23 464 487 464 487 0.96 5 23 0.021 4.5 9.9 8.9 1 23 493 516 493 516 0.96 6 23 0.0079 1.7 11.3 9.6 1 23 522 545 522 545 0.97 7 23 1.3 2.8e+02 4.3 10.7 3 23 553 574 551 574 0.94 8 23 0.01 2.2 10.9 9.1 3 23 582 602 580 603 0.93 9 23 0.74 1.6e+02 5.1 8.0 3 23 611 632 609 632 0.93 10 23 5.2 1.1e+03 2.4 14.2 1 23 638 661 638 661 0.95 11 23 0.012 2.6 10.7 7.8 1 23 667 690 667 690 0.93 12 23 4.3e-05 0.0094 18.4 5.3 1 23 696 719 696 719 0.96 13 23 0.43 93 5.8 9.3 1 23 725 748 725 748 0.95 14 23 0.0061 1.3 11.6 9.4 1 23 754 776 754 777 0.95 15 23 0.0014 0.3 13.7 7.1 1 23 783 806 783 806 0.97 16 23 1.4 3.1e+02 4.1 9.4 1 23 812 835 812 835 0.95 17 23 0.0061 1.3 11.6 9.4 1 23 841 863 841 864 0.95 18 23 0.0079 1.7 11.3 5.6 1 23 870 892 870 893 0.95 19 23 2.5 5.3e+02 3.4 9.6 1 23 899 921 899 922 0.94 20 23 0.39 85 5.9 12.1 1 23 928 951 928 951 0.96 21 23 2.5 5.3e+02 3.4 9.6 1 23 957 979 957 980 0.94 22 23 0.39 85 5.9 12.1 1 23 986 1009 986 1009 0.96 23 23 5.5 1.2e+03 2.3 12.0 1 23 1015 1037 1015 1038 0.94
Sequence Information
- Coding Sequence
- ATGATGAGTGGATCAAGAAGTCAGGTCAAGATCCTAGGTGACTTGTCCGAATCATTTAAGACCACTAGGggcctgagacaaggggatggactttcCTGCCTGTTGTTCAACTTTGCTCTCGAGAAGGTGATTAGGGACTCAGGAATACAGTGGGAAGGTCAGAGAGAGATTTGGAACAGGCAAGAAGCCTTAGAGCAAGCAGGACAAGGCATGGGACTCCAAGTAAACCAGTCCAAGACTAAATACATGGTTGCTAACCCTCCAAGACCACCAGCACCTCATATCACTTTTGGTGTTGACACTTTTGAGGGTGTTGATGGTTTTCAGTATCTTGGTTCACTGATCAAATCGGACAACACGACCAGCCCAGAAGTACAGAAAAGAATATTAGCTgcaaataagtgttattttggaTTGGCCAAGACATTGAGAAGTCGTCTATTATCAAGAAAGACCAAGGCTACGCTGTACAAAACGCTTATtaggcctgttttaacttatgcctcAGAAACCTGGCCTTTGTTAAAATCTGATGCTAACAGCTTACTGCTCTTTGAAAGAAAAGCATtgagaagaatgtttggagcggtAAGAGTGGGTGACCAGTTCAGGCTTAGgtataatgcagagctgtaCCAGATTTATCAGGAGCCCAATATGGTACAGCATATAAGAATTTCCAGGCTAAGATGGGCTGAGCATGTGGCTAGGATGGACGAAAACGCTACTCAGAAGAAACTTCTCTTTGGGCTTGTTCACGTGAAACAAGAAAAGGATATGCTTGTCCCTGACGAAGGTGAGGAAAATTCATTCTATTATCCTATCACTGTTTATATGTTCATTAACCCCTTGACATACAATGATGTTTGGGGGATGACATTCTTTTTATGTGCCACTGTAGACTTTGATATTTCTGAGACATCAGGAGCAGTCTCAGATGGGCTTAATCATGTGAAACATGAAGAACTGCTTATCCCAGACGAAGATGGACTTAGGCATGTGAAACATGAAGAACTGCTTATCCCAGACGAAGATGGGCTTAATCATGTGAAACATGAAGAACTGCTTATCCCAGATGAAGGAGACGAAGATAGttgcaaaaaaaatgaaaagaatttaCAATGTTATCATCaatgttctcattgtgattTTAAGTGTGTTACATCAACTGAGTTGAAGAATCATATCACTTGCCGCCATACACTTAAGAAGCCTCATCAgtgttctcattgtgattataagtgtgttACATCTCGACAATTGAAAAATCATATTACACGCCGCCATACacttgagaagcctcatcactgctatcattgtgattataagtgtgttACATCTCAAGATTTGAAAAGGCATATCATTCGCCGTCATACaattgagaagcctcatcactgttcTTATTGTGAGTGTAAATTTGTTACTTCTCAAGATTTGAAAGGGCATATCATGCGCCGTCATACaattgagaagcctcatcaatgttctcattgtgattataaatgtgTTACATCAGCAGAGTTGAAGACTCATATCACACGCTGTCATACACTtaagaagcctcatcaatgttctCATTGTGATCATAAGTGTGTTACTTCTCAAGATTTGAAAAGGCATATCATGCGCCGTCATACGATTGAGAAGCCTCAACactgttctcattgtgattataagtgttTTACATCAACAGAGTTGAAGAATCATATCACACGCTGTCACACACTTAAGAAGCCTCATCTctgttctcattgtgattataagtgtgttACTTCTCAAGATTTGAAAAGGCATATCATGCGCCATCATACGATTGAGAATCCTCAACactgttctcattgtgattataagtgtgttACATCTCAACAATTGAAAATTCATTTCACACGCCGTCATACATTTGAAAAGCCTCATCACTGCTCTCATTGTCATTATAATTGTGTTACATCAACAGAGTTGAAGAATCATATCACACGCTGTCATACACTtaagaagcctcatcaatgttctcattgtgattataagtgtgttACATCTCAAGATTTGAAAAAGCATATCTCATTCCGTCATAAaattgagaagcctcatcactgttcTTACTGTGGTTATAAATTTGTTACTTCTCAAGATTTGAAAAGGCATATCATGCGCCGTCATAAaattgagaagcctcatcactgttctcattgtgattataagtgtgcTTTGTCTAATGATTTGAAAAGGCATATCACACGCCGTCATACggttgagaagcctcatcaatgttctcattgtgattataagtgtgttACATCTCAACAGTTGAAGAATCATATCATTCGTCACCATACACTTGAGATGCCTCATCaatgttctcattgtgattataagtgtgttACATCAACAGAGTTGAAGAGGCATATCATTCGCCGTCATACGaatgagaagcctcatcactgttctcattgtgattataagtgtggTTTGTCTAATGATTTGAAAAGGCATATCACACGCCGTCATACggttgagaagcctcatcaatgttctcattgtgattataagtgtgttACATCTCAACAGTTGAAGAATCATATCATTCGCCACCATACACTTGAGATGCCTCATCaatgttctcattgtgattataagtatGCTTTGTCTGGAGATTTGAAGAATCATACCATACGCCATCATGCagttgagaagcctcatcactgttctcattgtgattataagtgtgcTTTGTCTGGAGATTTGATGACTCATACCATACGCCATCATACtgttgagaagcctcatcactgttctcattgtgattataagtgtaTTAGATCTAAAGAGCTGAAAATGCATATCATGCGGTGTCATACgattgagaagcctcatcactgttctcattgtgattataagtgtgcTTTGTCTGGAGATTTGATGACTCATACCATACGCCATCATGCagttgagaagcctcatcactgttctcattgtgattataagtgtaTTAGATCTAAAGAGCTGAAAATGCATATCATGCGGTGTCATACgattgagaagcctcatcactgttctcattgtgattataagtgttCTTTGTCTAGAGGTTTGAAGAATCATACCATACGCCATCATGCAGTTGAGATGCCTCATCACTGTTCTCATTGGATTATAAGGCTGCTAAATTGCAACCattga
- Protein Sequence
- MMSGSRSQVKILGDLSESFKTTRGLRQGDGLSCLLFNFALEKVIRDSGIQWEGQREIWNRQEALEQAGQGMGLQVNQSKTKYMVANPPRPPAPHITFGVDTFEGVDGFQYLGSLIKSDNTTSPEVQKRILAANKCYFGLAKTLRSRLLSRKTKATLYKTLIRPVLTYASETWPLLKSDANSLLLFERKALRRMFGAVRVGDQFRLRYNAELYQIYQEPNMVQHIRISRLRWAEHVARMDENATQKKLLFGLVHVKQEKDMLVPDEGEENSFYYPITVYMFINPLTYNDVWGMTFFLCATVDFDISETSGAVSDGLNHVKHEELLIPDEDGLRHVKHEELLIPDEDGLNHVKHEELLIPDEGDEDSCKKNEKNLQCYHQCSHCDFKCVTSTELKNHITCRHTLKKPHQCSHCDYKCVTSRQLKNHITRRHTLEKPHHCYHCDYKCVTSQDLKRHIIRRHTIEKPHHCSYCECKFVTSQDLKGHIMRRHTIEKPHQCSHCDYKCVTSAELKTHITRCHTLKKPHQCSHCDHKCVTSQDLKRHIMRRHTIEKPQHCSHCDYKCFTSTELKNHITRCHTLKKPHLCSHCDYKCVTSQDLKRHIMRHHTIENPQHCSHCDYKCVTSQQLKIHFTRRHTFEKPHHCSHCHYNCVTSTELKNHITRCHTLKKPHQCSHCDYKCVTSQDLKKHISFRHKIEKPHHCSYCGYKFVTSQDLKRHIMRRHKIEKPHHCSHCDYKCALSNDLKRHITRRHTVEKPHQCSHCDYKCVTSQQLKNHIIRHHTLEMPHQCSHCDYKCVTSTELKRHIIRRHTNEKPHHCSHCDYKCGLSNDLKRHITRRHTVEKPHQCSHCDYKCVTSQQLKNHIIRHHTLEMPHQCSHCDYKYALSGDLKNHTIRHHAVEKPHHCSHCDYKCALSGDLMTHTIRHHTVEKPHHCSHCDYKCIRSKELKMHIMRCHTIEKPHHCSHCDYKCALSGDLMTHTIRHHAVEKPHHCSHCDYKCIRSKELKMHIMRCHTIEKPHHCSHCDYKCSLSRGLKNHTIRHHAVEMPHHCSHWIIRLLNCNH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -