Acus019712.1
Basic Information
- Insect
- Arma custos
- Gene Symbol
- -
- Assembly
- GCA_037127475.1
- Location
- CM073759.1:219441216-219450900[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 1.3 2.7e+02 4.3 0.1 4 21 62 79 61 80 0.92 2 16 8.1 1.8e+03 1.8 8.6 1 23 90 113 90 113 0.95 3 16 0.00024 0.052 16.0 6.2 1 23 119 142 119 142 0.95 4 16 0.059 13 8.5 3.5 1 23 148 171 148 171 0.95 5 16 4.3 9.2e+02 2.7 0.1 5 23 181 200 180 200 0.83 6 16 0.0031 0.68 12.5 5.5 1 23 206 228 206 229 0.96 7 16 0.0023 0.49 13.0 0.9 1 23 235 258 235 258 0.95 8 16 0.49 1.1e+02 5.6 0.2 1 23 264 287 264 287 0.87 9 16 1.3 2.7e+02 4.3 0.1 4 21 316 333 315 334 0.92 10 16 8.1 1.8e+03 1.8 8.6 1 23 344 367 344 367 0.95 11 16 0.00024 0.052 16.0 6.2 1 23 373 396 373 396 0.95 12 16 0.059 13 8.5 3.5 1 23 402 425 402 425 0.95 13 16 4.3 9.2e+02 2.7 0.1 5 23 435 454 434 454 0.83 14 16 0.025 5.4 9.7 7.3 1 23 460 482 460 483 0.95 15 16 0.0023 0.49 13.0 0.9 1 23 489 512 489 512 0.95 16 16 0.49 1.1e+02 5.6 0.2 1 23 518 541 518 541 0.87
Sequence Information
- Coding Sequence
- ATGATAGCCGAGAATTTATTAGATCCCAGGGACGCTAACTCAATAAAGGCGTATTTAGTATACAGCATTACAGAGGTTCACCATGTCGACCATGAAGGGACGGgtgCTGAAAGCATGAAAGAAACTGTCATTTTTAATGTGCTTGTAAACAATCTATGTACAGACGAGAAGCCTCAACGACCTCCTCATTGTAAATATAAAGTTGgtaaaaaaaatgctttgaaaAATCATATCAATTCCAACAAACAAGACAAAAGACAAAAGCTtcatcaatgtccacattgtaGTTTTAAAGCAACAAGGCCTTGTAAGATAAGACAGCACATAAAGGACTGTCATACAGTTGAAAAGCCTCATAAATGCCCACATTGTAGTTATAGAACAACAAAACCTTCTCATTTAAGAAAGCacataatggctcgtcatacagGcgaaaagcctcatcaatgtccacattgCGAATATAAAGCAGTTCAAATTCGTAGTTTAAAATCTCATATAATGGCCTGTCATACAGGCAAAAAGCCTCTTCAAGGTCCACATTGTGAATCTAAAGCAGTTCGAATTGATGCTTTAAAATTACACATGATGTCCGATCATACAGGGGAAAAGCTTTATGAATGTCTACATTGTAGTTATAAATCAACAACGTCTCGTTATTTAAGACAGCACATAAtcactcatcataaaggtgaaaggcctcatcaatgtccataTTGTGAATATAAGGCAACTATATCtgatactttaaaaaaacacataatggcccgtcatacaggtgaaaggcctcatcaatgtccataTTGTGAATATAGAGCAGTTCAAGTTGCTTCTATAAAATTACACGTAATGGCCAATCATAAAGgtgCTGAAAGCATGAAAGAAACTGTCATTTTTAATGTGCTTGTAAACAATCTATGTACAGACGAGAAGCCTCAACGACCTCCTCATTGTAAATATAAAGTTGgtaaaaaaaatgctttgaaaAATCATATCAATTCCAACAAACAAGACAAAAGACAAAAGCTtcatcaatgtccacattgtaGTTTTAAAGCAACAAGGCCTTGTAAGATAAGACAGCACATAAAGGACTGTCATACAGTTGAAAAGCCTCATAAATGCCCACATTGTAGTTATAGAACAACAAAACCTTCTCATTTAAGAAAGCacataatggctcgtcatacagGcgaaaagcctcatcaatgtccacattgCGAATATAAAGCAGTTCAAATTCGTAGTTTAAAATCTCATATAATGGCCTGTCATACAGGCAAAAAGCCTCTTCAAGGTCCACATTGTGAATCTAAAGCAGTTCGAATTGATGCTTTAAAATTACACATGATGTCCGATCATACAGGGGAAAAGCTTCATGAATGTCTACATTGTAGTTATAAATCAACAACGTCTCGTTATTTAAGACAGCACATAAtcactcatcataaaggtgaaaggcctcatcaatgtccataTTGTGAATATAAGGCAACTATATCtgatactttaaaaaaacacataatggcccgtcatacaggtgaaaggcctcatcaatgtccataTTGTGAATATAGAGCAGTTCAAGTTGCTTCTATAAAATTACACGTGATGGCCAATCATAAAGGAAGAAGACGTGCAGATTTCCAGTTCATTGAGCTGGACATACCAtcctccacagttcctaaaccACATACACCGGAGTTTCCTATACCGACTCCACCTCATCCAGAGCCTATGAAAACTGAGTGTCTTTCTTCTTGA
- Protein Sequence
- MIAENLLDPRDANSIKAYLVYSITEVHHVDHEGTGAESMKETVIFNVLVNNLCTDEKPQRPPHCKYKVGKKNALKNHINSNKQDKRQKLHQCPHCSFKATRPCKIRQHIKDCHTVEKPHKCPHCSYRTTKPSHLRKHIMARHTGEKPHQCPHCEYKAVQIRSLKSHIMACHTGKKPLQGPHCESKAVRIDALKLHMMSDHTGEKLYECLHCSYKSTTSRYLRQHIITHHKGERPHQCPYCEYKATISDTLKKHIMARHTGERPHQCPYCEYRAVQVASIKLHVMANHKGAESMKETVIFNVLVNNLCTDEKPQRPPHCKYKVGKKNALKNHINSNKQDKRQKLHQCPHCSFKATRPCKIRQHIKDCHTVEKPHKCPHCSYRTTKPSHLRKHIMARHTGEKPHQCPHCEYKAVQIRSLKSHIMACHTGKKPLQGPHCESKAVRIDALKLHMMSDHTGEKLHECLHCSYKSTTSRYLRQHIITHHKGERPHQCPYCEYKATISDTLKKHIMARHTGERPHQCPYCEYRAVQVASIKLHVMANHKGRRRADFQFIELDIPSSTVPKPHTPEFPIPTPPHPEPMKTECLSS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -