Acus049236.1
Basic Information
- Insect
- Arma custos
- Gene Symbol
- -
- Assembly
- GCA_037127475.1
- Location
- CM073762.1:101923524-101936312[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.013 2.9 10.5 4.3 1 23 60 83 60 83 0.98 2 18 1.1 2.3e+02 4.5 6.1 1 23 91 114 91 114 0.91 3 18 4 8.6e+02 2.8 1.3 3 23 122 143 122 143 0.93 4 18 0.00072 0.15 14.5 4.3 1 23 196 219 196 219 0.98 5 18 0.17 36 7.1 8.0 1 23 226 249 226 249 0.95 6 18 0.08 17 8.1 0.4 1 23 287 310 287 310 0.92 7 18 0.0001 0.022 17.2 1.2 1 23 327 350 327 350 0.96 8 18 0.01 2.2 10.9 0.3 1 23 356 379 356 379 0.97 9 18 0.037 8 9.1 0.8 2 23 416 437 415 437 0.93 10 18 0.0061 1.3 11.6 2.3 1 23 443 466 443 466 0.97 11 18 0.032 7 9.3 7.8 1 23 471 494 471 494 0.95 12 18 1.7 3.7e+02 3.9 4.7 1 23 500 523 500 523 0.93 13 18 0.0053 1.1 11.8 1.0 1 23 529 552 529 552 0.97 14 18 0.00089 0.19 14.2 2.5 1 23 558 581 558 581 0.97 15 18 0.00027 0.058 15.9 2.6 1 23 587 610 587 610 0.97 16 18 0.014 3 10.5 4.3 1 23 616 639 616 639 0.97 17 18 0.17 37 7.1 1.5 2 23 646 668 646 668 0.96 18 18 0.002 0.44 13.1 1.7 1 23 674 697 674 697 0.97
Sequence Information
- Coding Sequence
- ATGATTAATGTAGAACATGAAGATGTGAACGGTGAACATGTGACTGTTAAGGAAGAACCAGAGGATGAAGCATTGTTACAGAAATCAGGTGATGATGTAGTAGTCACTATAAAAAGCGAGCCAGATGATTTCGAACCATGTGATAATCCATTTCATGGGTTCAAAGctGTCTCGCCCTATAAATGTCACCACTGTGGTTTGGAGTGGGATAAGTTTAATGATCTCAGAAGACATATTAGATCCAAGCACATTCCGATGCGGCAGGTCATGCACAAATGCCACTATTGCTCCTTCAAAGGAAGTttacttattcatttaaaaaagcatATGGGCGAGAAGCATTCGGACGCAGCCACACTATGGTGTCCGTATTGCTACTACCAGACCTCCATTCCGAAATGCTTAAGGTACCATGTTATCAACAAGCACCTTAAGGGAAATTGTAGTGATACTCAAGCTGCATTAACGAGTGAACCAATTAAAACTGAATCAGatgaagaagaagaagatgaagatGTGGCAGTTTCTGTAAAAAGTGAGCCTGAGGAGTTAGAACCTTTTTATGGTTTTGAAAcTTCTACTCCAtataaatgttatcactgtggAAAAAGGTTGGACAAGTTCGTGGATCTGAAGAAACATATCAAGTCCAAACATATTATGTCATTGTTGAAGCACCATTGTCCTTACTGTCATTTCAAAGGTACCCGCCTGAAACAGCTGAAAAAACATGTTTCGAAAAATCACCCAAAGGAAAGAATATTGTGGTGCCCTTACTGCTACTATCAAACCTCTATTCCATACTGCTTAAGGTTTCATGTTATCAAGAGGCATATCAAGAGAAAATGTATTCAGCTGTACGAATGTTTTTATTGTCATAAGAGCTGGGAAGACCTTGATGTGCTAAGGTCTCACATCGACCTTATCCACATTAAACATTTTGCTCAGAAACGGAAGATTTTAAAACAAGACCGACCTTATAAATGCCCCTATTGCGACTATAGCACAGCACAAGGTGATTATTTGAAGCACCATATCAATGCTAAGCATACAAAAGCTGCAGTCTACCCTTGTCCCTACTGCCCGTACATCGCTTACATGAAAAACTCTCTAACTTATCACTTAAAAGTCAAGCACACTAATTCTAACGATAAACTTTGTTGTCCCCACTGTGATTTCACTGCCTTTACTggtactattttaaaatatcacatAATCGGTGAACATACTAAAGACAAACACCTCTCATGCCcttattgtgattataaatctttCAGACCCTACCTATTGAGATTTCACCTGCTAAAAcatactaaagaaaaaaattatccgTGTCAACAGTGTAATTACAAAGCATCACGCCTCGAGCTGTTGAAACATCATGTTAAGTCAAAACATAATccagaaaaatttaaatgtaaattttgtgATTTTAAATGCTCTCAATATTCCCAACTTAAATTGCACCTCCACCTAAATCACAGGGACGAACTTATGCATAAGTGCACACAGTGTGATTACAAAGCTGCTCGGGCTTATACTTTGAAATGCCACTTGCAACTGAAGCATAATAGTGAAAAGAATTTTGTATGTGATCAATGCAATTACAGAACATCATTAGCTAATAAATTGAAACTCCATATGGATACTAAGCATTGTGCAGAGAAGCTTCATAAGTGTCCTCACTGTAGTTATGAAGTCGCACAAGCTTTCTCGttgaaaaatcatattaaaatcaAGCACGATCGAGAGAAACCTCACAAATGCCCATCCTGTGATTATAGATGCGCATCCGCTTCTTATCTGCTCTCTCATATAAGGGTGAAGCATACGAAAGAAAAGATTTTCAAGTGTGAGTATTGTGATTATACCTCAGGGTCTAACTGTAGTCTGAAATATCATGTAAAATCTAAACACTTGAGGGATAGTTTCCGACAGTGCCCGCATTGCGAATATAATGCTCTCACTACTAGTGCTTACAATCGCCACATGAAACGTTTGCATAGTAATGAGAAACCGTTTAAGTGTTCACATTGCGATGCTAAGTATCCCTTTGGTTGGGAATTGAAACGTCATATTAAAAACCAACACCCAGAATTTGAGGGGGAAAGGTGA
- Protein Sequence
- MINVEHEDVNGEHVTVKEEPEDEALLQKSGDDVVVTIKSEPDDFEPCDNPFHGFKAVSPYKCHHCGLEWDKFNDLRRHIRSKHIPMRQVMHKCHYCSFKGSLLIHLKKHMGEKHSDAATLWCPYCYYQTSIPKCLRYHVINKHLKGNCSDTQAALTSEPIKTESDEEEEDEDVAVSVKSEPEELEPFYGFETSTPYKCYHCGKRLDKFVDLKKHIKSKHIMSLLKHHCPYCHFKGTRLKQLKKHVSKNHPKERILWCPYCYYQTSIPYCLRFHVIKRHIKRKCIQLYECFYCHKSWEDLDVLRSHIDLIHIKHFAQKRKILKQDRPYKCPYCDYSTAQGDYLKHHINAKHTKAAVYPCPYCPYIAYMKNSLTYHLKVKHTNSNDKLCCPHCDFTAFTGTILKYHIIGEHTKDKHLSCPYCDYKSFRPYLLRFHLLKHTKEKNYPCQQCNYKASRLELLKHHVKSKHNPEKFKCKFCDFKCSQYSQLKLHLHLNHRDELMHKCTQCDYKAARAYTLKCHLQLKHNSEKNFVCDQCNYRTSLANKLKLHMDTKHCAEKLHKCPHCSYEVAQAFSLKNHIKIKHDREKPHKCPSCDYRCASASYLLSHIRVKHTKEKIFKCEYCDYTSGSNCSLKYHVKSKHLRDSFRQCPHCEYNALTTSAYNRHMKRLHSNEKPFKCSHCDAKYPFGWELKRHIKNQHPEFEGER
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -