Basic Information

Insect: Arma custos
Gene Symbol: -
Assembly: GCA_037127475.1
Location: CM073763.1:76400324-76404086[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.47 1e+02 5.7 0.3 3 21 172 190 170 191 0.91

2 14 0.025 5.5 9.7 2.5 1 23 209 232 209 232 0.96

3 14 1.4e-05 0.003 19.9 3.1 1 23 238 261 238 261 0.97

4 14 0.0038 0.82 12.3 0.2 1 23 267 290 267 290 0.95

5 14 0.34 74 6.1 3.2 1 23 296 319 296 319 0.95

6 14 0.094 20 7.9 0.1 3 23 327 348 325 348 0.95

7 14 0.011 2.3 10.8 6.6 1 23 354 377 354 377 0.97

8 14 0.0003 0.064 15.7 1.0 1 23 384 407 384 407 0.96

9 14 0.15 32 7.2 3.5 1 23 414 437 414 437 0.96

10 14 0.16 34 7.2 0.1 2 23 444 466 443 466 0.94

11 14 0.031 6.7 9.4 0.0 1 23 472 495 472 495 0.95

12 14 0.29 63 6.3 2.7 2 23 503 525 502 525 0.94

13 14 0.22 47 6.7 0.8 2 23 532 554 531 554 0.95

14 14 0.095 20 7.9 1.8 1 23 560 584 560 584 0.79

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.47	1e+02	5.7	0.3	3	21	172	190	170	191	0.91
2	14	0.025	5.5	9.7	2.5	1	23	209	232	209	232	0.96
3	14	1.4e-05	0.003	19.9	3.1	1	23	238	261	238	261	0.97
4	14	0.0038	0.82	12.3	0.2	1	23	267	290	267	290	0.95
5	14	0.34	74	6.1	3.2	1	23	296	319	296	319	0.95
6	14	0.094	20	7.9	0.1	3	23	327	348	325	348	0.95
7	14	0.011	2.3	10.8	6.6	1	23	354	377	354	377	0.97
8	14	0.0003	0.064	15.7	1.0	1	23	384	407	384	407	0.96
9	14	0.15	32	7.2	3.5	1	23	414	437	414	437	0.96
10	14	0.16	34	7.2	0.1	2	23	444	466	443	466	0.94
11	14	0.031	6.7	9.4	0.0	1	23	472	495	472	495	0.95
12	14	0.29	63	6.3	2.7	2	23	503	525	502	525	0.94
13	14	0.22	47	6.7	0.8	2	23	532	554	531	554	0.95
14	14	0.095	20	7.9	1.8	1	23	560	584	560	584	0.79

Sequence Information

Coding Sequence: ATGATTCAACATTATTTAGCAGAGCAAGAAATAGCGCGCATGAACTGGCCTGCTTGTTCACCAGAAATGAATCCAATTGAACATGTTTGGGATGAACTCCAACGGCAATTACACATGCGTTCACCTTGTCCAGATAACTTGAATGAACTTGCTGCCACCTTAATTGAGGAATGGGCTAATTTACCTCAAGATTACATATTGAGCTTAATAAGGAGTATGAATCACCGATATGAAGCATTAATTCAAAGTAGGATCATTTGGCTTAGGACTGATACTGAGGTAGTTGAATATGTTGAATGTGATCAAgAAGTAGAAatagaaaccactgaagttgcCCCACCATGCAAAGAAGAAAGCAGAGATGACTTATCAAGTATAGAATCAAaaacaGTTAACTATATGAATTCGGACCTTGAATATGAAGATGATTCCCCAGATGATGACTGGGTTAACCAATCACCCAGTAAAGAAACAATTACAAAAGtttccAGATCTAAAAGTTCAGACATAATCTGCTATAGTTGTGGAAAACAGTTTGATTGTTTAAGTTCGTTACAAGATCATGCCAGAGCAAATGGAACAAGGCAGGCAAAAGACATTGGCAGAGAACCTATTTGGAAAAAACATACATGCTGTATTTGTGGTTATACGACTGAAAAAATTTGGAGCCTTAAGACTCACATCACCTCCATTCATGAGGGAAAGAGGCCTTTTATTTGCCCACATTGTGAATACAGCTGCACACAGTTGGGAAATCTAAGGTCTCACATCAGATCTCAGCATACCAAAGAGAAACCTTTTGCATGTAAAGAATGTGACTACAAAGCAACTGGCTCAGCGGCACTGAAGCGACATGTTATGTATAAACATACAAAAGAAAAACCATATCAGTGTAATCATTGTAGTTTTAAAGGAACAACATCGGCTGCTCTAAAATGTCATGTGATGTCAGTCCATACTAAAGAAAGGCCATATGGATGTGAATATTGTGATTATCGAGCTTCTCAGTATGGTGCATGGAAACAGCATGTTTTAAGTGCTCATACAAAGGATAAACCATACCACTGCACACATTGTGACTATAGTTCAACCAAGTTTGATACATTACAGACACACATCAAAAATAAGCATAACATTTATGAACCTTCTTTTCAGTGTCCTCATTGTGATGTAGTACTAAGTCATACAACATTACTTGTCGCTCACATGCAAGAATTTCACACTGATAATATTAGCAGTCACCACTGTCCTTATTGTGAGCATGTCACTGAATCAGAAGAAACCATCAAAGAACATATTCAAACAAAACATGCTCAGAAAAAATCTCAGCAATGCCCATTTTGTGGTGTAACAGCTTTGAGTTTTGGAGGCTTAAAACGCCATATTAAAGTTGTTCATGTGAAACAGAAATATTATGTATGTGTTTATTGCAATTATAGGGCTTCTTTACCTGAAGATTTGGAAAGCCATGTTTCAATAACTCATGCAGAAGAGAAGAAGAAGCTTTGTTGTTGTCAGTGTGATTTTAGGGCCAACACTTATGCCGAACTTACTAGCCATATTATGTCCGAACATTTGAAACATAACCCATGCCAATGCCCATTTTGTTCTCATATTGATACTTCAAGTGAAGGTCTTGCTGCCCACATTCGATCTGTGCatgcaaaacaaaaaatgtacaggtgtcctcattgtgattttAGCACTGCTTCTAGTCAACAGGATGTACAAAATCATATAATGACCGTTCATGAATAA
Protein Sequence: MIQHYLAEQEIARMNWPACSPEMNPIEHVWDELQRQLHMRSPCPDNLNELAATLIEEWANLPQDYILSLIRSMNHRYEALIQSRIIWLRTDTEVVEYVECDQEVEIETTEVAPPCKEESRDDLSSIESKTVNYMNSDLEYEDDSPDDDWVNQSPSKETITKVSRSKSSDIICYSCGKQFDCLSSLQDHARANGTRQAKDIGREPIWKKHTCCICGYTTEKIWSLKTHITSIHEGKRPFICPHCEYSCTQLGNLRSHIRSQHTKEKPFACKECDYKATGSAALKRHVMYKHTKEKPYQCNHCSFKGTTSAALKCHVMSVHTKERPYGCEYCDYRASQYGAWKQHVLSAHTKDKPYHCTHCDYSSTKFDTLQTHIKNKHNIYEPSFQCPHCDVVLSHTTLLVAHMQEFHTDNISSHHCPYCEHVTESEETIKEHIQTKHAQKKSQQCPFCGVTALSFGGLKRHIKVVHVKQKYYVCVYCNYRASLPEDLESHVSITHAEEKKKLCCCQCDFRANTYAELTSHIMSEHLKHNPCQCPFCSHIDTSSEGLAAHIRSVHAKQKMYRCPHCDFSTASSQQDVQNHIMTVHE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00764184;
90% Identity: iTF_01298689;
80% Identity: -