Acus042986.1
Basic Information
- Insect
- Arma custos
- Gene Symbol
- -
- Assembly
- GCA_037127475.1
- Location
- CM073762.1:10146587-10151248[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 0.13 27 7.5 4.8 1 23 356 378 356 378 0.98 2 21 0.051 11 8.7 4.3 1 23 385 408 385 408 0.95 3 21 0.015 3.3 10.3 1.3 2 23 416 438 415 438 0.93 4 21 0.0018 0.39 13.3 5.3 1 23 444 466 444 466 0.98 5 21 0.044 9.4 8.9 3.4 1 23 473 495 473 495 0.98 6 21 0.0038 0.83 12.2 3.1 1 23 502 525 502 525 0.95 7 21 0.00045 0.097 15.2 3.5 2 23 532 553 531 553 0.97 8 21 0.044 9.5 8.9 6.6 1 23 588 610 588 611 0.95 9 21 0.0022 0.47 13.0 1.6 2 23 618 640 617 640 0.96 10 21 0.0071 1.5 11.4 2.5 1 23 646 669 646 669 0.97 11 21 4.6 1e+03 2.5 3.7 1 23 675 698 675 698 0.92 12 21 0.0022 0.47 13.0 1.6 2 23 705 727 704 727 0.96 13 21 0.0071 1.5 11.4 2.5 1 23 733 756 733 756 0.97 14 21 0.017 3.7 10.2 8.9 1 23 762 785 762 785 0.97 15 21 0.76 1.6e+02 5.0 0.2 2 23 792 814 791 814 0.89 16 21 0.26 57 6.5 2.8 1 23 820 843 820 843 0.91 17 21 0.072 16 8.2 2.2 1 23 849 871 849 871 0.97 18 21 0.033 7.1 9.3 5.6 1 23 876 899 876 899 0.96 19 21 0.017 3.7 10.2 4.1 1 23 905 928 905 928 0.97 20 21 0.3 64 6.3 5.4 1 23 934 957 934 957 0.95 21 21 2.3 4.9e+02 3.5 5.6 1 23 963 985 963 986 0.93
Sequence Information
- Coding Sequence
- ATGGCGACTAGAGCTGGCTCCGTTTGTTTATGGCATATCTTACCGCCCCGGGAGGACAACACCAAGACAGACACACTCTCCCGTATCTGTAATCCTTCAACTTCTACTGTTTTGATCCAGCTTCACCAATCTTTGGGCCACTCTGGTGTTAAAAGTATGTACCATTGGCTCAAAAGTATGAACATTCTCTGTTCACTTGAAGATGTCAAGAAGATGACTTCAAGTTGTACCATCTGTGCTGAAGTAAAACCTAGGTATTTGAAAACTTTTGGAACCTTAGTAAAGCTCACCTCTTCATTTGAACGCATCATAACAGATTTTAAGGGCCCTCTCCCTTCCAGATCACAGAACCTGTACTTCCTTACGATCATTGACGAGTATTCCCGCTTCCCTTTCGCATATCCCTGTTGTGTTGTTCCTGCTGGCACTGTGGTTGAGTGTCTCAAAAATCTCCTCTGTTTGTTTTTAATGCCAGCCTATGTCCACTCTGACCGAGGAGCTTCATTTATGTCTAGGGAAGTCAAGGATTTCCTCCATTCAAACGGTATAGCTACCAGCAGAACAACACTCTACAATCCGATAGGAAATGGGAAAATTAAATGCCTCAATGGAACTCTGTGGACAACCATTTGTCTCTCTTTTAAGACTCTAGGACTGCGGATGGGGAAAGTGTCCTACAGGAATCCCTCCACGCTGTTCGATCTCTACTTTGCACAGCAACTAACTCCACTCCCCATGGACGATTTTTCACTCATCCTCACCGTGCAGCCAAATGGAGTCACCTTGCCGTCTTGCAAATATGAAGACCCTGTCGGGGAAGTGGAATTACTTGAGGCTAACCCACAGTATGCTCTAATTTGCAAGAAGGATGGATCAGAATCAACCGTGTACCTGAGACAATTAGCACCTAGAGAGGAATTCCTGAAATATTCGAGAAGCCTTGCCCAAATGGTGAAACTAGAAGAAGAATTGCTCATCTCTGATGAAggTGCCAAGGATTTATTCAGTGACCTAGAGGATTGTAAAGTAGAAGTTAAAAGCTCTAAAACTATAGGTAAGAGACCTCaccaatgtcctcattgtgatcaTAAATCAGATAGATCAGCAATTATGAAAAGACATATACTGACCCATGATACATCTGACAAGCCTTTCCAATGTTTTCATTGTgaatttaaaaccataaaaaaatttaatttaaaaacccaCATACTGGCTCGTCACACTTGTGAGAAACCTCTCCTCCATTGTCCTCAATGTGAATATAAATCAATTTCTTCTAGTTATATGAAAAGACATATAATGGGACGTCACAAGTTTAAGAAGCCTCACCAATGTCCGCATTGCGATTATAAATCAGATAAATCAACAAATATGAAAAGACATTTACTGACACATGATACATTTGACAAGACTtttcaatgtcctcattgtgatcaTAAATCAGATAGATCAGCAATTATGAAAAGACATTTACTGACCCATGATACATCTGACAAGACTTTCCAATGTTTttattgtgaatttaaaaccataaacaaatttaatttaaaaaaacacctaaTGGGTCGTCACACTTCTGAGAAACCTCTCCAGTGTCCTcaatgtgattataaatcaatttcttCTAGTTGTATGAAAAAACACATGAGACGTCACAATGTTAAGAAGCCTCACCAATATCCGCAATGTGAATATAAAACGTCAGCAGCTCATGCTCTGAATCTCCTTATTATGTCCATTCATGCCAAAGAAAAACCTCATCAATGTCTTCATTGTGACTTTAAGaccataaacaaatttaatttaaaaaaccacgTTATGGCTCATCACACTGGTGAGAAACCTCTCCATTGTCCTcaatgtgattataaatcaatttcttCTAGTAGTATTAAGAGGCATATAATGACACGTCACGatggtgagaagcctcatcaatgtcctcactgtgaatATAAAACGTCAGCAGCTCATGCTCTGAAACTCCATATTATGTCCATCCATGCCAAAGAAAAACCTCATCAATGTCTTCATTGTGACTTTAAGaccataaacaaatttattttaaaaaaccacGTTATGGCTCGTCACACTGGTGAGAAACCTCTCCATTGTCCTcaatgtgattataaatcaatttcttCTAGTAGTATTAAGAGGCATATAATGACACGTCACAatggtgagaagcctcatcaatgtcctcactgtgaatATAAAACGTCAGCAGCTCATGCTCTGAAACTCCATATTATGTCCATTCATGCAAAAGAaaaacctcatcaatgtcctcattgtgaccaCAAAACTGTTAAAAGGCATtctttaaaattacatataaggTCCCGTCATACCCGTGAAAATCTTCTTCAATGTCCCTATTGTGAGTTTAAAACTGCAGAAAATCGTGGTATGAAGAATCACGTGATAGCCCGCCATACAGGCGAGAAGCCTTataaatgtcctcattgtgattataaatctttGGCTTCTTATTGTTtggaaaaacatataatggcaaACCATACAGCTGAAAAGCCTCataaatgtcctcattgtgactttAGTGCTGTGGAAATTAAACGTTTGGAAAGACATATAAGCCGCCACTCTGAGAAGCCTTTTCAttgttctcattgtgattataaagcAGCCAGATCTGCATATTTAAGACACCACGTGAAAGTCCGTCATTCAAGTGAAAAACCCCATCGATGTCCTCATTGCGATTATAAATCAGTgatttcaaaatatttgaaaactcaTATAATGAGCCGTCATACTGAAGAGAAGCATCATCGTTGCTCttactgtgattataaatcagctaATTATCAATATGTTAAAAGGCATATTGACTCATGTCATTTAAAAGAGAAACCTTATCAATGTCACCATTGTAATCATAAAGCTGCAACATTAGGTCGAATTAAAAGACATATAGTAGGTCACCATGTTGATGAGTGA
- Protein Sequence
- MATRAGSVCLWHILPPREDNTKTDTLSRICNPSTSTVLIQLHQSLGHSGVKSMYHWLKSMNILCSLEDVKKMTSSCTICAEVKPRYLKTFGTLVKLTSSFERIITDFKGPLPSRSQNLYFLTIIDEYSRFPFAYPCCVVPAGTVVECLKNLLCLFLMPAYVHSDRGASFMSREVKDFLHSNGIATSRTTLYNPIGNGKIKCLNGTLWTTICLSFKTLGLRMGKVSYRNPSTLFDLYFAQQLTPLPMDDFSLILTVQPNGVTLPSCKYEDPVGEVELLEANPQYALICKKDGSESTVYLRQLAPREEFLKYSRSLAQMVKLEEELLISDEGAKDLFSDLEDCKVEVKSSKTIGKRPHQCPHCDHKSDRSAIMKRHILTHDTSDKPFQCFHCEFKTIKKFNLKTHILARHTCEKPLLHCPQCEYKSISSSYMKRHIMGRHKFKKPHQCPHCDYKSDKSTNMKRHLLTHDTFDKTFQCPHCDHKSDRSAIMKRHLLTHDTSDKTFQCFYCEFKTINKFNLKKHLMGRHTSEKPLQCPQCDYKSISSSCMKKHMRRHNVKKPHQYPQCEYKTSAAHALNLLIMSIHAKEKPHQCLHCDFKTINKFNLKNHVMAHHTGEKPLHCPQCDYKSISSSSIKRHIMTRHDGEKPHQCPHCEYKTSAAHALKLHIMSIHAKEKPHQCLHCDFKTINKFILKNHVMARHTGEKPLHCPQCDYKSISSSSIKRHIMTRHNGEKPHQCPHCEYKTSAAHALKLHIMSIHAKEKPHQCPHCDHKTVKRHSLKLHIRSRHTRENLLQCPYCEFKTAENRGMKNHVIARHTGEKPYKCPHCDYKSLASYCLEKHIMANHTAEKPHKCPHCDFSAVEIKRLERHISRHSEKPFHCSHCDYKAARSAYLRHHVKVRHSSEKPHRCPHCDYKSVISKYLKTHIMSRHTEEKHHRCSYCDYKSANYQYVKRHIDSCHLKEKPYQCHHCNHKAATLGRIKRHIVGHHVDE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -