Basic Information

Insect: Arma custos
Gene Symbol: PRDM1
Assembly: GCA_037127475.1
Location: CM073759.1:123791270-123801801[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 5 4e-07 8.6e-05 24.8 1.1 1 23 627 649 627 649 0.99

2 5 8e-06 0.0017 20.7 5.1 1 23 655 677 655 677 0.98

3 5 1.6e-06 0.00035 22.9 4.2 1 23 683 705 683 705 0.98

4 5 0.004 0.86 12.2 2.5 1 23 711 733 711 733 0.97

5 5 0.00028 0.061 15.8 0.3 1 22 739 760 739 760 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	5	4e-07	8.6e-05	24.8	1.1	1	23	627	649	627	649	0.99
2	5	8e-06	0.0017	20.7	5.1	1	23	655	677	655	677	0.98
3	5	1.6e-06	0.00035	22.9	4.2	1	23	683	705	683	705	0.98
4	5	0.004	0.86	12.2	2.5	1	23	711	733	711	733	0.97
5	5	0.00028	0.061	15.8	0.3	1	22	739	760	739	760	0.96

Sequence Information

Coding Sequence: ATGGTGGCTCGGGCCGGGGGGAAGCAGACGGCTAGACAGGTTGGGAGACTTAGTTTAACCTCTATTCACGTTTCGTCTATTCTTGAAACCACTCACTACGCTACTGGCATCGCCTATGTACCTCCCCTATCTCATATTACATATTCCGCTAAAGCTCATAGTTGCTTCAGGGAATATCAACGAACGGGAAGGCGCCCTAAGGACGAGCACGGAGCGGTAACACACTCTCCTGTTACTAAGGGTGGTGCGACCTTCATCGCTAGCCCCGCCCCATCGACTCCACCAGAGCTCTCTGCTCCGGAAAGTGGGTCAGTAGTACCATATCGATTTCTAGCCGCTACTACTCTTTCCGGCCTCACTCGCTCAGAGCTGACTTTTGATGTTTGGGTAGTAGCTCCTGTCTGCCTATCGACCCCCAATCTCTCTTCCAATTATGAAgAGGAGGTGATTGAGGAAGAAGACTGGGATCCAGCGACAACAAGGGAGGAGGAGTTTGAGAAACATGCAGTTTACTTGGTGTTGGATCAGGCGCCTCCACCTGGGGTGCCCAATCGAGCCGAGGCGTCTCTGCCTCGCAACTTGGTCCTCAGGCCGAGCCAAGCCTTATCTGATgTAATGGGAGTTTGGAGTACGAGTTACATACCGAGAGGTACAAGGTTTGGACCCTTAGTCGGAGAAGTATATGCTAAAAATGAAGTTCCGTCCACTGCTAATCGCAAATACTTCTGGAGGGTTTATAAAGAGAACCAATTGTTTTACTACATTGATGGTTATGATGTTTCTAAGTCTAATTGGATGCGTTATGTCAACCCTGCCTATTCTTCAGAATCTCAGAACTTAATTGCTTGCCAGTATAAgATGTCTATTTACTTTTATACTATCAGGCCTATCTTGCCTAATCAAGAACTTCTTGTCTGGTACTGCCGAGAATTTGCAGAAAGGTTAAATTATCCACTTACAGGAGAACTAATGCTCCAGAGAATACGCCAGCAAGTTCAGCAAAGCGGAACCGGAGCGAAACCCGAATCAACTAGTGTACCTGAAGTGGTGAGCTCGACTGAAAAACCTGTTTATAGCGACatcatgaataataattatcagcGAGGACGATCTTCTTCCCCAGAGCTTTCTGAAGTCAAAGAAGAAGGTGGTGAGAAAGAAGCCGCTGGCTCAGTTAGATCTGATGAAGGCTACCACAGCCATGGCTATCACGATGAGATTTTAACTCCCCCTGGCCACTCTTCAGACAGCGATGATCCAGATAATAATTATGTTCTTGATTTCAGCAGTAAGAAAACTGTTGAAGAAGGGATGGAACTAACAACAGTTGAAGAAGTGGATACTGTTCTTGTTGGAGCAGTACCTGCAGCACAGACCTCTGTAGTTGTAGGGCCTGGTGTCCCTCTCCCCGTCACTGGAGGCGGGGAAGAATACAGGGATAGGAATGAGTACCGAAAGGTAAAGATTAAAATGGCGAAAGCTTATCCAGCCACGCCAGGAATGAAAGAAGATATCAAAGATGAAAACAAAGAACCAGCACCACAACCGtccattttagaaaatatactaTTAAGGAATAAAGAAGAGAAGGAGTCACCTCCGAGCAGCCCAACTGAGATGGCTTATAGCTACAAGAAGTCAGCAAGATATGGAAATGTACCTGTCAGCCCCGATTCCACAGGAGTTGCTCATTATTCACCTCCACCGAATTACCCTGAATATCCCTACTACAACTATCAACCACAGAACTACTCTCCGCCAAGCAGTTCAGCATGGTTCGGCCAGAATGGAAATGATGAATTCCCACTTTCACCGACCGGATCTCGGGGGTACAGgtCACTGCCTTACCCTTTGAAGAAAAAGGATGGAAAAATGCATTATGAATGTAATGTCTGCTTCAAAACATTCGGCCAGCTCTCCAATTTGAAAGTGCATTTACGCACTCACAGCGGCGAGCGCCCTTTCAAGTGCAATGTCTGCACAAAGAGTTTCACCCAATTGGCTCACTTACAGAAGCATCACCTTGTTCATACTGGTGAAAAACCACATCAGTGTGAAATTTGTAAGAAAAGGTTCAGTTCAACTTCCAACCTTAAAACCCACCTTCGCTTACATTCGGGCCAGAAGCCGTATGCGTGCGACCTATGTACTGCGAAATTCACCCAGTTCGTTCATCTTAAGCTACACAAAAGGCTTCACACCAATGAGAGGCCATACACATGCCAAGGGTGTTCAAAGAAGTATATTTCTGCTTCTGGTTTGAGGACACATTGGAAGACAACAAGCTGCCGGCCGAACATGGAGGAAGAGATAGCGTTAGCGGCAGCTGCAGCTGTGACTTATCCATCCCAATACTACTATGACTACCAGGGAATGGAAGTTGGTTCAGgtgAGAAAGAGAACCATGAGGCTGATTCCAGAGAAAGTTTTGATATAGAGCGACCTCAACAGGAACAGCCGACGAGACCAACGGTCATTGAATCTTCACAACCTCATATAATTGAGTGCACTTAG
Protein Sequence: MVARAGGKQTARQVGRLSLTSIHVSSILETTHYATGIAYVPPLSHITYSAKAHSCFREYQRTGRRPKDEHGAVTHSPVTKGGATFIASPAPSTPPELSAPESGSVVPYRFLAATTLSGLTRSELTFDVWVVAPVCLSTPNLSSNYEEEVIEEEDWDPATTREEEFEKHAVYLVLDQAPPPGVPNRAEASLPRNLVLRPSQALSDVMGVWSTSYIPRGTRFGPLVGEVYAKNEVPSTANRKYFWRVYKENQLFYYIDGYDVSKSNWMRYVNPAYSSESQNLIACQYKMSIYFYTIRPILPNQELLVWYCREFAERLNYPLTGELMLQRIRQQVQQSGTGAKPESTSVPEVVSSTEKPVYSDIMNNNYQRGRSSSPELSEVKEEGGEKEAAGSVRSDEGYHSHGYHDEILTPPGHSSDSDDPDNNYVLDFSSKKTVEEGMELTTVEEVDTVLVGAVPAAQTSVVVGPGVPLPVTGGGEEYRDRNEYRKVKIKMAKAYPATPGMKEDIKDENKEPAPQPSILENILLRNKEEKESPPSSPTEMAYSYKKSARYGNVPVSPDSTGVAHYSPPPNYPEYPYYNYQPQNYSPPSSSAWFGQNGNDEFPLSPTGSRGYRSLPYPLKKKDGKMHYECNVCFKTFGQLSNLKVHLRTHSGERPFKCNVCTKSFTQLAHLQKHHLVHTGEKPHQCEICKKRFSSTSNLKTHLRLHSGQKPYACDLCTAKFTQFVHLKLHKRLHTNERPYTCQGCSKKYISASGLRTHWKTTSCRPNMEEEIALAAAAAVTYPSQYYYDYQGMEVGSGEKENHEADSRESFDIERPQQEQPTRPTVIESSQPHIIECT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01298667; iTF_00764160; iTF_00715341; iTF_01309756; iTF_00757607; iTF_00154769;
90% Identity: iTF_01309756;
80% Identity: -