Acus049694.1
Basic Information
- Insect
- Arma custos
- Gene Symbol
- -
- Assembly
- GCA_037127475.1
- Location
- CM073762.1:108759964-108761694[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 4.5 9.8e+02 2.6 5.0 1 20 10 29 10 31 0.87 2 19 0.0014 0.29 13.7 6.8 2 23 40 61 39 62 0.95 3 19 0.038 8.3 9.1 8.3 1 23 68 90 68 91 0.94 4 19 0.0001 0.022 17.2 3.2 1 23 97 120 97 120 0.97 5 19 0.001 0.22 14.0 6.3 1 23 126 149 126 149 0.97 6 19 0.016 3.5 10.3 10.3 1 23 155 177 155 178 0.94 7 19 0.063 14 8.4 10.3 1 23 184 206 184 207 0.94 8 19 0.069 15 8.3 6.0 3 23 215 235 213 236 0.93 9 19 1.1e-05 0.0023 20.3 3.5 1 23 242 264 242 265 0.96 10 19 0.062 13 8.4 8.2 1 23 271 294 271 294 0.95 11 19 0.047 10 8.8 5.8 1 23 302 325 302 325 0.96 12 19 0.38 83 5.9 9.6 1 20 331 350 331 354 0.94 13 19 0.096 21 7.8 10.9 1 23 360 382 360 383 0.94 14 19 0.011 2.3 10.9 10.0 1 23 389 412 389 412 0.97 15 19 0.0021 0.46 13.0 4.6 1 20 418 437 418 438 0.96 16 19 0.04 8.7 9.0 9.1 1 23 447 470 447 470 0.96 17 19 0.043 9.2 8.9 10.1 1 23 476 499 476 499 0.95 18 19 0.0073 1.6 11.4 7.3 1 23 505 528 505 528 0.96 19 19 0.1 22 7.7 11.8 1 23 534 556 534 557 0.94
Sequence Information
- Coding Sequence
- ATGGCTCAGCACACAAGCAAGAGGCCTCATCATTGCCCTGACTGTGATTATAGGTGTAATATTTCTCAACATTTGAACTTTCATATCATGCACCAGGATAAATTTGAGAAGCTTAATCAgtgttctcattgtgattataaatgtgTTACGTCGGAAGAGTTAAAAAAGCATGTCATGAGGCATCATACaattgagaagcctcatcattGTTCTCAATGTGATCATAAATATGCTTTGTCTGTACAGTTAAAAAGGCATATCATGAGGCATCATACAATTGAGAAGCCTCATCGCTGTTCTCAATGTGATTATAAATATGTTACTTCTCAAGAATTGAATAAACATATCATGCGCCGCCATACACTTGAGAAGCCCCATCaatgttctcattgtgattataagtgtgttACATCTGAAGGATTGAAGAATCATATCATGCGTCGTCATACacttgagaagcctcatcactgttctcattgtgattataagtgtgttACACCAACAGAGTTGAAGAATCATATCTTGCGTCATCATACCtttgagaagcctcatcactgttctcattgtgattataaatgtgCTTTATCTGTTCAGTTAAAAAGGCATATCATGATGCATCATACAATTGAGAAACCTCATCTCTGTTCTcaatgtaattataaatgtgCTTTGTCTGTACAATTAAAAAGGCATATCATCAGGCATCATGCCATTGAGAAGGCTTATCGCTGTTCTCAATGTGATTATAAATATGTTACTTCTAATGAGTTGAGGAGACATATCATGCGCCATCATACACTTGAGAAGCCCCATCACTGTTCtaattgtgattataagtgtgttACATCTGAAGAGTTGAAGAGTCATATCATGCACCGTCATACGATTGAGAAGCACAAGCCTTATCACTGTTCTCATTGTGAATATAAGGGTGTTAATTCTCAACATTTGAAGAGTCATATCGCACGTCGTCATATacttgagaagcctcatcactgttctcattgtgattataagtgtgttACATCTAACGAGTTGAAGAATCATATCTTGTGCCGTCATACTGTTGACAAGCCTCATCactgttctcattgtgattataaatgtgCTTTATCTGTACAGTTAAAAAGGCATATCATGAGGCATCATACAATTGAGAAGCCTCATCGCTGTTCTCAAtgtgattataagtgtgttAGATCTGAACATTTGAAAAGTCACATCATGCGCTGTCATACACTAGAGAAGCCTTATCACTGTTcgcattgtgattataaatgtgTTACTTCTGAAGATTTGAAAAAGCATATAACTTGCCGTCATATgattgagaagcctcatcactgttcttattgtgattataaatgtgCTTTGtctgtaaatttaaaaaggcaTATCATGCGCTGCCATATACTTGGGAAGCCTCACCactgttctcattgtgattataaatgtgTTACTTCTCAAGAGCTGAAAAAGCATATCACACGACGACATACaattgagaagcctcatcactgttctcattgtgattataaaagtGTTACATCTCAAGAGTTGAAGAATCATATGATGCGCCGTCATACTATTGAGAAGACTCATCactgttctcattgtgattTTAAGTGTATAACATCTAAAGAGCTGAAAAAACATATCGCACGCCATCATACAATTGATCTTATCAATGCTCTTAATGTGACTACAAAGCTGCTAAATTGCAACCattga
- Protein Sequence
- MAQHTSKRPHHCPDCDYRCNISQHLNFHIMHQDKFEKLNQCSHCDYKCVTSEELKKHVMRHHTIEKPHHCSQCDHKYALSVQLKRHIMRHHTIEKPHRCSQCDYKYVTSQELNKHIMRRHTLEKPHQCSHCDYKCVTSEGLKNHIMRRHTLEKPHHCSHCDYKCVTPTELKNHILRHHTFEKPHHCSHCDYKCALSVQLKRHIMMHHTIEKPHLCSQCNYKCALSVQLKRHIIRHHAIEKAYRCSQCDYKYVTSNELRRHIMRHHTLEKPHHCSNCDYKCVTSEELKSHIMHRHTIEKHKPYHCSHCEYKGVNSQHLKSHIARRHILEKPHHCSHCDYKCVTSNELKNHILCRHTVDKPHHCSHCDYKCALSVQLKRHIMRHHTIEKPHRCSQCDYKCVRSEHLKSHIMRCHTLEKPYHCSHCDYKCVTSEDLKKHITCRHMIEKPHHCSYCDYKCALSVNLKRHIMRCHILGKPHHCSHCDYKCVTSQELKKHITRRHTIEKPHHCSHCDYKSVTSQELKNHMMRRHTIEKTHHCSHCDFKCITSKELKKHIARHHTIDLINALNVTTKLLNCNH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -