Acus061808.1
Basic Information
- Insect
- Arma custos
- Gene Symbol
- -
- Assembly
- GCA_037127475.1
- Location
- CM073764.1:50846739-50857970[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.34 74 6.1 2.2 1 23 145 168 145 168 0.93 2 17 0.6 1.3e+02 5.3 6.6 1 23 174 197 174 197 0.93 3 17 0.087 19 8.0 5.8 1 23 203 226 203 226 0.95 4 17 0.0013 0.29 13.7 1.7 1 23 232 255 232 255 0.95 5 17 0.0028 0.59 12.7 4.6 1 23 261 284 261 284 0.94 6 17 0.0018 0.4 13.2 3.9 1 23 290 312 290 313 0.94 7 17 0.0033 0.7 12.5 2.6 1 23 319 342 319 342 0.95 8 17 0.0038 0.81 12.3 1.1 2 23 349 370 348 371 0.95 9 17 0.0085 1.8 11.1 4.5 1 23 401 424 401 424 0.94 10 17 8.9e-05 0.019 17.4 4.2 1 23 430 452 430 453 0.95 11 17 0.0053 1.1 11.8 3.3 1 23 459 481 459 482 0.95 12 17 9.9 2.1e+03 1.5 5.6 1 23 488 510 488 511 0.91 13 17 0.00037 0.08 15.4 1.2 2 23 518 540 518 540 0.95 14 17 0.022 4.7 9.9 5.6 1 23 546 569 546 569 0.94 15 17 0.0065 1.4 11.5 4.0 1 23 575 598 575 598 0.95 16 17 0.023 5 9.8 2.5 1 23 604 627 604 627 0.94 17 17 0.00036 0.079 15.5 2.6 1 23 633 656 633 656 0.94
Sequence Information
- Coding Sequence
- ATGCCTAAGGCAGGGAGGTGGGCTCTCACCGTTGCCCTTGAGAAGGTAATAAGAACATCAAAAGAAAATGGCGAGCTGCAGGTCAGAATGCAGCATAAAATTCTTGCATATGCCGATGATATACCAGTCCTCAGATGTAATGAGGTGGGTTTCAAGAGACTCACTAAGATGCTAATGAAAGAAGCAGACCAAATCGCCTTACAAGtaaataaagagaaaacaaaatatgaggaagaaaatgctgtggATTCAAGCCCTGGACCCTCAATTCTCCAGCCTGCTGATTCTAGTCCAGATTTATATTTTGTAGTGGATAAGCAAGATTTAGAAACATATGAGATATCTTCAGACGATGATGCACAGAgtgatagaaataaaaatgagaagaaaactaaaaaagGTGCCAAGGATAGTTCCCTTAAAAAGAAGTTtcatcaatgtccacattgtgatTACAAAGCAGTACTATTTAGAAGTATAAAAAGACATGTGATGTCCattcatacaggtgagaagcctcatcattGCACTCATTGTGACCATAAATCTGTCACTGTACAAGAATTGAAAAGACAtgtaatggctcgtcatacggGTGAGAAACCTCATCACTGTCCTCACTGTGAACATAAATCTATTACACCAAAAGAAATGAAAAGACATATAATTGTTCGGCATACGGGTGATAAGCCTCATCAGTGCCCTCAATGTGAACATAAATCTATCACACCTCAAGAATTGAAaagacatataatggctcgccatacaggtgagaagccttaTCACTGCCCTCACTGTGATCATAAATCAATTACACAAAATGATTTAAAGCGAcatgtaatggcccgtcatactggtgagaaaccccatcaatgtcctcactgtgactataaaacagttaCATCTGGAAACATGAAAAGCCATGTATTGGCTCATCATTCAGATAAaaaacctcatcaatgtcctcactgtgattatcaATCCATTAGGATAAGAGATTTAAAAAGACATGTAATATCTCGGCATATAGGCGAGAAACCTAATCAATGTCCTTATTGTGATTACAGATCAGTggaatctaaaaatattaaaaatcacatAATGCTCCATCATCCAAGTGAGAATCCTCCCCATGGTAATTATAATTCTATTACACCACAGGAATTGAAAATGACAACTTACGATGTTGATGAGAAACCTCataaatgtcctcattgtgaccaTAAATCCATTACACTTCAAGATTTGAAAAAAcatgtaatggcccgtcatacggGTGAGAAACCTCATCAATGCCCGCATTGTGATTTTAAGTCTGTTCAATCaggaaatttgaaaaatcatataatgGTCCATCATACAGgagagaagcctcatcaatgtcctcattgcgaATATAAATCAGTTCAAGCTGTGAGTATGAAAAGCCATATAATGGTCCACCATACAGGagagaagcctcatcactgtccttattgtgattataaatcagtagAATCAGCTAGTGTGAAATGTCATATAATGGTTCATCATACAGGGGAGAAGCCTCGTCAATGCCcccattgtgattataaatcagtacAATCTGGAAGTATGAAAAGACATATGATGGCCAATCATACAGGTGAAAAACCTCACCattgtcctcattgtgattttAAATCTATTTCACAACATGATTTAAGAATTCATATTATGGCTCGTCATACGGGTGAGAAGCCTCACCAGTGCCCTCATTGTGATCATAAATCTGTCACTGTACAAGAATTAAAAAGACATCTGATGGCtcgtcatactggtgagaaACCTCATCACTGTCCtttttgtgattataaatcagtacAATCTGGAAGTATGAAAAATCATATTATGGCCCGCCATACTGGCGAGAAGCcttatcaatgtcctcattgccAATATAAATCTGTTAAAcctcataatttaaaaagtcaTATAATAGCTCGTCAtccaggtgagaagcctcattaG
- Protein Sequence
- MPKAGRWALTVALEKVIRTSKENGELQVRMQHKILAYADDIPVLRCNEVGFKRLTKMLMKEADQIALQVNKEKTKYEEENAVDSSPGPSILQPADSSPDLYFVVDKQDLETYEISSDDDAQSDRNKNEKKTKKGAKDSSLKKKFHQCPHCDYKAVLFRSIKRHVMSIHTGEKPHHCTHCDHKSVTVQELKRHVMARHTGEKPHHCPHCEHKSITPKEMKRHIIVRHTGDKPHQCPQCEHKSITPQELKRHIMARHTGEKPYHCPHCDHKSITQNDLKRHVMARHTGEKPHQCPHCDYKTVTSGNMKSHVLAHHSDKKPHQCPHCDYQSIRIRDLKRHVISRHIGEKPNQCPYCDYRSVESKNIKNHIMLHHPSENPPHGNYNSITPQELKMTTYDVDEKPHKCPHCDHKSITLQDLKKHVMARHTGEKPHQCPHCDFKSVQSGNLKNHIMVHHTGEKPHQCPHCEYKSVQAVSMKSHIMVHHTGEKPHHCPYCDYKSVESASVKCHIMVHHTGEKPRQCPHCDYKSVQSGSMKRHMMANHTGEKPHHCPHCDFKSISQHDLRIHIMARHTGEKPHQCPHCDHKSVTVQELKRHLMARHTGEKPHHCPFCDYKSVQSGSMKNHIMARHTGEKPYQCPHCQYKSVKPHNLKSHIIARHPGEKPH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -