Acus049293.1
Basic Information
- Insect
- Arma custos
- Gene Symbol
- -
- Assembly
- GCA_037127475.1
- Location
- CM073762.1:102577956-102593549[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.00065 0.14 14.7 4.2 1 23 167 190 167 190 0.96 2 23 0.046 10 8.8 4.2 1 23 196 219 196 219 0.96 3 23 0.044 9.6 8.9 0.5 1 23 225 248 225 248 0.96 4 23 0.69 1.5e+02 5.1 0.8 3 23 256 277 254 277 0.87 5 23 0.68 1.5e+02 5.2 0.2 2 23 286 308 285 308 0.94 6 23 0.0026 0.55 12.8 1.7 1 23 311 334 311 334 0.97 7 23 0.0053 1.1 11.8 0.4 1 23 340 363 340 363 0.95 8 23 0.0066 1.4 11.5 1.8 1 23 369 392 369 392 0.97 9 23 0.022 4.9 9.8 2.5 1 23 394 417 394 417 0.96 10 23 0.0066 1.4 11.5 1.8 1 23 507 530 507 530 0.97 11 23 0.022 4.9 9.8 2.5 1 23 532 555 532 555 0.96 12 23 2.2 4.7e+02 3.6 0.4 1 23 616 639 616 639 0.89 13 23 0.0096 2.1 11.0 1.9 1 23 712 735 712 735 0.94 14 23 0.083 18 8.0 0.1 1 23 741 764 741 764 0.96 15 23 0.02 4.4 10.0 0.4 1 23 770 793 770 793 0.97 16 23 0.012 2.5 10.7 1.9 1 19 836 854 836 859 0.92 17 23 0.023 5.1 9.8 0.3 1 23 865 888 865 888 0.97 18 23 0.022 4.7 9.9 3.4 1 23 894 917 894 917 0.91 19 23 0.0023 0.49 13.0 2.9 2 23 924 946 924 946 0.94 20 23 0.01 2.2 10.9 3.8 1 23 952 975 952 975 0.98 21 23 2.3 5.1e+02 3.5 0.8 1 23 980 1003 980 1003 0.93 22 23 0.0017 0.36 13.4 1.4 1 23 1061 1084 1061 1084 0.94 23 23 1.5 3.2e+02 4.1 2.2 1 23 1090 1113 1090 1113 0.90
Sequence Information
- Coding Sequence
- ATGTCTCTACTTCACATAACCGCATCATCTCTAGGATTCACACAACTTGTCTTAAGAACAGACCTTTTATACTTTAGTACTAGTCTTTCTGCTGTAATGGATGGGCACAAGAgttaCAACTTATTGGATGAGAAAGACTTGGAGGCAGCTGTGAAACTGATTTTAATTGATGAATTCAATGATGAAGTTTCATATGAATTGCAGGAATCCAAAGAAGTAGAATTAGTTCATATACCACCAAACGATGGAAACGACACGGACAAGGATGATGCTGGGAGCGACGCTGAACGGGACCCTCCTGAGGTTTTCCATCTGGGAAGAGaCCCTATATTTTCAGCAGTGGTCCAAAGGCAAATTAAGGAAGAATTGGTAGAAGAACTTGAGGTTTTCGCTCATCATTATGACAACATTGATTTTTCAATTGTCAAGCAAGAGAAAGAAATATTTCTAGAAGAGCCTAATGTGGATCATGggCCTGCTCGTAAAAAAGACAAATTTCACAAGTGTCTTGAGTGTCATTACAAAACTGTGAGACCCGATCATTTAATCCGACATCAAAGAGCTATCCATCTTAAACATAAACCGTTCAAATGTTCACAATGTACTTTTAAATGTTCAGAAGCTAGATCACTTAAGAGACATGTGATTTCCAAACATCCATTAGAGAAACCCTACAAATGTCCGAAATGTCAATTTAAAGCAATAAGTGAGCAGGAAATGAATAGACATCTGGAAAGTCAGCACAAGAAGAATAATCTCAACTGTTGTTTAGAATGTGGATATAAGACTGAAAAATTTCAGGATCTTGAAAAACATGTTGCAGATGTTCATATTAAAGCCAAAGATGATTCAAATAAGTGCTTTGATTGTTCCTATATTGCTCAAAGTGCCCAGGAGCTAAAAAATCACATAGCGTATCTTCATAAAGTCCATCAATGTTCACTCTGCGATTACAAAACGACTGATCTTCGCGacataaataaacatatcaGGTCTGTTCATGCGGGAGATAAACCATATATTTGTTCACAATGTGGCTTTCGAGCTCCTGATGCGAGTAAGTTGAAAAGGCATAAGGTGACCAAACATCCTCTTGAGAAGCCCTACCATTGTCCTGATTGTGATTTCAAAACAGCTAGTGAACGTGATATGAAAAGGCATACAGAGACTCAGCATCCTCATAAATGTGAAAAATGCGATTTCAAAACAGGACAATATCAGGATTTAGAGAAACATATTGCCAAATTCCACATGGATGATGAATCCAATAGCTCTGATGATAGCGAAAGCGGAAGTCACAGTACTGATGAAGTGGTGAAGCATTTCACTTCCAACAACCCGAAAGCCAAACTGCGtgatcataaaaaaacaattagtcGAGATGGGGCAGTAAGTGGACTCAGAATGACTGATCATTTGAAAGACAATTCTTTTCAGTGCTCTCTTTGCAGGTTTTCATCTCTTGAAGCTGCTATTCTAAAGAGACATAAGGTGACCAAACATCCTCTTGAGAAGCCCTACCATTGTCCTGATTGTGATTTCAAAACAGCTAGTGAACGTGATATGAAAAGGCATACAGAGACTCAGCATCCTCATAAATGTGAAAAATGCGATTTCAAAACAGGACAATATCAGGATTTAGAGAAACATATTGCCAAATTCCACATGGATGATGAATCCAATAGCTCTGATGATAGCGAAAGCGGAAGTCACAGTACTGATGAAGTGGTGAAGCATTTCACTTCCAACAACCCGAAAGCCAAACTGCGtgatcataaaaaaacaattagtcGAGACGGGGCAGTAAGTAGACTCAGAATGACTGATCGTTTGAAAGACAATTCTTTTCAGTGCTCTCTTTGCAGGTTTTCATCTCTTGAAGCTGCTACTCTAAAGAGACATATGGTGGCCAAACATCCAAAGGAGAAAGCTAGCAATTGTCCTGATAGCCATTTTAAGGCAGATAAGGAACGACCTATTGAAAGGTGCAACAGTAGTGTTAAtgctaaaaaaaatgaatgttttgtTTCTGACAGTAGTATAGAACAGATCAAGGAGTCAAAAAAACATTCTGTACCCAAGAAAAAAGTAAGTGAATCTGAAACTGATAGGCTAATCGATGATCAAAAACATTATGAATGCATTCACTGTGATTTTAAAACTACTAATCCCATTCACTTAAATAGGCATATAAAGGCGATCCATGCTAAAGAAATGCCTTACCAATGTTCCCAGTGTGGGTTCAGTGCCGCAGAAGCGATCGTTTTGAAAAGGCACGTTATGTCCAAGCATCCTAAACTGACATCCTACCAATGTCCCGATTGTAGTTATGAAACTACTAATGTTCTCGAAATGAATAAGCATACGACTACACTCCATCCTAATGATTTAGAAGAGCATACAAATATTTGTTGTACAGAATCAGGTGGGTCTAAAGGTGATGTAACAGATTCTAATAATGATTCTGAACCGtgcattaaaaatgaaataaaaaaagcaaaaacttatCAATGTGAGCATTGTGAGTACAATACTAAGAATGCTCAGCATTTAGTTAGGCATGATAGAGCTATTCATAAAAAAGAGAAACCATTCAAATGCCTGGAGTGTGAATTCAGTGCTGTAGaggctatttatttaaaaaggcaCATGATGTCCAAACATCCTTTTGAAAAACCCTATCATTGCTCAGACTGTGATTTTAAAACTTCTAATGAGCGTAGTCTGAAGAGACACTCAGAGAACCAACACCCTCCCGACATTATACCAAAGTGTAAGAAATGTAAGTACAAATCGTCGAGTAAGTCGGActtgaaaaatcatttattggCCTTTCATAGTGATAAAGAGCCACACAAGTGTCAAGATTGTGAATTCACAACTAGTAGCAGTCTTGAATTTAGGAGGCACGTCAAAACCTCACATTCTAAGGAAAAGCACAGCTGTTCTCAGTGTGAATATACTTCACTGAATCGTGATGATTTAGACAAACACGCCTTATCTATTCATAAAAACTGtctaaataagaatataaaggtgaaaaatacgaaaaagaaaatatacaatattaaaaaacccGTTTGTAAACTAAGGTATTCATCGGATGTGCAAAAAGAGGCTTTGCCCATAAATCTTAGAGGGAAGAAAAGTTCAAACAGTCTGAAATCGAAAGCAAAATCCTTCGAGTGTGGGCATTGCGACTACAAAACTGAATTTAGCCGTAATTTGAGAAGACATGTTATGGCGATTCATAAGAAAGACAAACCTTTCCTTTGTCCCATGTGCAGTTTTACCTGTGCTGAGCTTGGCTGCTTGAAGAATCACGTACTGGCCAAACATTTGTGA
- Protein Sequence
- MSLLHITASSLGFTQLVLRTDLLYFSTSLSAVMDGHKSYNLLDEKDLEAAVKLILIDEFNDEVSYELQESKEVELVHIPPNDGNDTDKDDAGSDAERDPPEVFHLGRDPIFSAVVQRQIKEELVEELEVFAHHYDNIDFSIVKQEKEIFLEEPNVDHGPARKKDKFHKCLECHYKTVRPDHLIRHQRAIHLKHKPFKCSQCTFKCSEARSLKRHVISKHPLEKPYKCPKCQFKAISEQEMNRHLESQHKKNNLNCCLECGYKTEKFQDLEKHVADVHIKAKDDSNKCFDCSYIAQSAQELKNHIAYLHKVHQCSLCDYKTTDLRDINKHIRSVHAGDKPYICSQCGFRAPDASKLKRHKVTKHPLEKPYHCPDCDFKTASERDMKRHTETQHPHKCEKCDFKTGQYQDLEKHIAKFHMDDESNSSDDSESGSHSTDEVVKHFTSNNPKAKLRDHKKTISRDGAVSGLRMTDHLKDNSFQCSLCRFSSLEAAILKRHKVTKHPLEKPYHCPDCDFKTASERDMKRHTETQHPHKCEKCDFKTGQYQDLEKHIAKFHMDDESNSSDDSESGSHSTDEVVKHFTSNNPKAKLRDHKKTISRDGAVSRLRMTDRLKDNSFQCSLCRFSSLEAATLKRHMVAKHPKEKASNCPDSHFKADKERPIERCNSSVNAKKNECFVSDSSIEQIKESKKHSVPKKKVSESETDRLIDDQKHYECIHCDFKTTNPIHLNRHIKAIHAKEMPYQCSQCGFSAAEAIVLKRHVMSKHPKLTSYQCPDCSYETTNVLEMNKHTTTLHPNDLEEHTNICCTESGGSKGDVTDSNNDSEPCIKNEIKKAKTYQCEHCEYNTKNAQHLVRHDRAIHKKEKPFKCLECEFSAVEAIYLKRHMMSKHPFEKPYHCSDCDFKTSNERSLKRHSENQHPPDIIPKCKKCKYKSSSKSDLKNHLLAFHSDKEPHKCQDCEFTTSSSLEFRRHVKTSHSKEKHSCSQCEYTSLNRDDLDKHALSIHKNCLNKNIKVKNTKKKIYNIKKPVCKLRYSSDVQKEALPINLRGKKSSNSLKSKAKSFECGHCDYKTEFSRNLRRHVMAIHKKDKPFLCPMCSFTCAELGCLKNHVLAKHL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -