Acus049724.1
Basic Information
- Insect
- Arma custos
- Gene Symbol
- -
- Assembly
- GCA_037127475.1
- Location
- CM073762.1:108935666-108940732[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 30 0.046 10 8.8 11.6 1 23 10 32 10 33 0.94 2 30 0.2 44 6.8 4.5 1 20 39 58 39 59 0.95 3 30 0.0035 0.75 12.4 7.1 1 23 68 91 68 91 0.96 4 30 0.053 11 8.6 7.8 1 23 97 120 97 120 0.95 5 30 0.057 12 8.5 9.1 1 23 126 149 126 149 0.95 6 30 0.21 45 6.8 7.3 1 23 155 178 155 178 0.95 7 30 0.067 15 8.3 10.2 1 23 184 207 184 207 0.95 8 30 0.0025 0.53 12.9 7.5 1 23 213 236 213 236 0.96 9 30 0.019 4.2 10.0 9.8 1 23 242 265 242 265 0.95 10 30 0.022 4.8 9.8 7.6 1 21 271 291 271 294 0.95 11 30 0.004 0.87 12.2 6.0 1 23 300 322 300 323 0.95 12 30 5 1.1e+03 2.4 11.0 1 23 329 351 329 352 0.94 13 30 0.0051 1.1 11.9 8.0 1 23 358 381 358 381 0.96 14 30 0.0016 0.35 13.4 5.4 1 23 387 410 387 410 0.96 15 30 0.0046 1 12.0 8.1 1 23 416 439 416 439 0.96 16 30 0.0038 0.83 12.2 4.3 1 21 445 465 445 466 0.94 17 30 6.5 1.4e+03 2.1 6.8 2 23 480 502 479 502 0.96 18 30 0.0016 0.35 13.4 6.8 1 23 538 561 538 561 0.97 19 30 0.36 77 6.0 3.2 1 18 567 584 567 584 0.93 20 30 0.0066 1.4 11.5 6.3 1 21 596 616 596 619 0.95 21 30 0.022 4.7 9.9 9.3 1 23 625 648 625 648 0.95 22 30 0.0014 0.31 13.6 6.5 1 23 654 677 654 677 0.96 23 30 0.0023 0.49 13.0 9.0 1 23 683 705 683 706 0.95 24 30 0.56 1.2e+02 5.4 5.0 1 17 712 728 712 736 0.81 25 30 0.56 1.2e+02 5.4 5.0 1 17 742 758 742 766 0.81 26 30 0.15 32 7.2 2.5 1 17 772 788 772 796 0.84 27 30 0.0014 0.31 13.6 4.4 1 23 802 825 802 825 0.96 28 30 0.019 4.2 10.0 9.8 1 23 831 854 831 854 0.95 29 30 0.0092 2 11.0 6.2 1 21 860 880 860 883 0.95 30 30 0.017 3.6 10.2 6.9 1 23 889 912 889 912 0.95
Sequence Information
- Coding Sequence
- ATGCGCCGTCATACGATTGACAAGCCTCATCactgttctcattgtgattataaatgtgTCACTTCTGAAGATTTGAAAAAGCATATCACACGCCATCATACaattgagaagcctcatcactgtactcattgtgattataagtgtgcTTTGTCTACAGATTTGAAAAATCATATCGCATGCCGTCATGCatttgagaagcctcatcaatgttctcattgtgattataaatgtgTTACATCTCAACAGTTGAAAAATCATATCGCACGCCGTCATATatttgagaagcctcatcactgtcatcattgtgattataagtatGCTTTGTCTACAGATTTGAAAAATCATATCGCACGCCGTCATACACTTGAGAAACCTCATCactgttctcattgtgattataaatgtgTTACTTCTCAAGACTTGGAAAAGCATATCACACGCCGTCATAAAATTGAGATGCCTCATCactgttctcattgtgattataagtatGCTTTGTCAATAGATTTGAAAAATCATATCATACGGTGTCATACAATTGAGAAACCTCATCactgttctcattgtgattataaatgtgTTACTTCTCAAGATTTGAAAAAGCATATCACACGCCGACATACAATTGAGAAGCCTTATCactgttctcattgtgattataagtgcATTAGGTCATCAGAGTTGAAGAGTCATATCATGTACCGTCATACaattgagaagcctcatcactgttctcattgtgattataagtgcGTTAGATCAACAGATTTGAAGAGACATATCATGTACCGTCATACAATTGAGAAGCCTTATCaatgttctcattgtgattataagtgcGTTAGATCAGTAGAGTTGCAGAGTCATATCATGTGCCATCATACGATTGACAAGCCTTATCATTGTTCTCAATGTGATTATAACTGTGTTACATCAGCAGAGCTGAAGAATCATATCTCACGCCATCATATGATTGACAAGCCTCATCACTGTTCTCAATGTGATTATAAGTGCGTTAAATTTCTATATTTGAAGAAACATATCATGAGGCATCATACatttgagaagcctcatcaatgttctcattgtgattataaatgtgTTACTTCTcaagaattgaaaaaacatatcaCACGCCGTCATACaattgagaagcctcatcaatgttctcattgtgattataagtgtgttACATCAGCAGAGTTGAAGATTCATATCATGTACCGTCATACATtggagaagcctcatcaatgttctcattgtgattataaatgtgTTACTTCTCAAGATTTGAAAAAGCATATCACACGCCGTCATACAATTGAtaagcctcatcaatgttctcattgtgattataaatgtgTTACTTCTCAAGATTTGAAAAACCATATCACAAGCCGAGTCAACGATAGTTGcgaaaatgttaaaaagaatTTACAATGTTATCATTGTGACTTTAAATCAGAAGATCATCGAGGCATTAAAAGGCATATAAAATCCTGTCATCAAGGTAAGAGGCTTCTTCAATCCTCTCACTATGATTATAACTGCGTTACAAATCGACATTTGAAGAGCCATACCATGTGCTGTCATACGATTGACAAGAAGCCTTATCaatgttctcattgtgattataagtgcATTAGGTCAGCAGAGTTGAAGAGTCATATCATGTACTGTCATACaattgagaagcctcatcactgttctcattgtgattataagtgtgttAGATCAACAGATTTGAAGAGACGTATCATGTACCGTCATACAATTGAGAAGCCTTATCaatgttctcattgtgattataagtgcGTTAGATCAGTAGAGTTGAAGAATCATATCATGTGCCGTCATACGATTGACAAGCCTCATCactgttctcattgtgattataaatgtgTCACTTCTGAAGATTTGAAAAAGCATATCACACGCCAGCATACAATTGAGAAGCCTTATCactgttctcattgtgattataaatgtgTCACTTCTGAAGATTTGAAAAAGCATATCACACGCGGGCATACAATTGAGAAGCCTTATCactgttctcattgtgattataagtgcGTTAGGTCAGCTGAGTTGAAGAGGCATATCATGTACCATCATACatttgagaagcctcatcaatgttctcattgtgattataagtgcGTTAGATCAGCAGAGTTGAAGAGTTCTCATATCATGTACCATCATACatttgagaagcctcatcaatgttctcattgtgattataagtgcGTTAGATCAGCAGAGTTGAAGAGTTCTCATATCATGTACCATCATACatttgagaagcctcatcaatgttctcattgtgattataagtgcGTTAGATCAGCAGAGTTGAATAGTTCTCATATCATGTACCGTCATACATTTGAGAAGCATCATCaatgttctcattgtgattataagggCGTTAGATCAACAGATTTAAAGAGACATATCATGTACCGTCATACaattgagaagcctcatcactgttctcattgtgattataagtgtgttAGATCAACAGATTTGAAGAGACATATCATGTACCGTCATACAATTGAGAAGCCTTATCaatgttctcattgtgattataagtgcGTTAGATCAGTAGAGTTGAAGAGTCATATCATGTGCCGTCATACGATTGACAAGCCTCATCactgttctcattgtgattataaatctgtcaCTTCTGAAGATTTGAAAAAGCATATCACACGCCGGCATACAATTGAGAAGATCATCGAGGCATTAAAAGGCATATAA
- Protein Sequence
- MRRHTIDKPHHCSHCDYKCVTSEDLKKHITRHHTIEKPHHCTHCDYKCALSTDLKNHIACRHAFEKPHQCSHCDYKCVTSQQLKNHIARRHIFEKPHHCHHCDYKYALSTDLKNHIARRHTLEKPHHCSHCDYKCVTSQDLEKHITRRHKIEMPHHCSHCDYKYALSIDLKNHIIRCHTIEKPHHCSHCDYKCVTSQDLKKHITRRHTIEKPYHCSHCDYKCIRSSELKSHIMYRHTIEKPHHCSHCDYKCVRSTDLKRHIMYRHTIEKPYQCSHCDYKCVRSVELQSHIMCHHTIDKPYHCSQCDYNCVTSAELKNHISRHHMIDKPHHCSQCDYKCVKFLYLKKHIMRHHTFEKPHQCSHCDYKCVTSQELKKHITRRHTIEKPHQCSHCDYKCVTSAELKIHIMYRHTLEKPHQCSHCDYKCVTSQDLKKHITRRHTIDKPHQCSHCDYKCVTSQDLKNHITSRVNDSCENVKKNLQCYHCDFKSEDHRGIKRHIKSCHQGKRLLQSSHYDYNCVTNRHLKSHTMCCHTIDKKPYQCSHCDYKCIRSAELKSHIMYCHTIEKPHHCSHCDYKCVRSTDLKRRIMYRHTIEKPYQCSHCDYKCVRSVELKNHIMCRHTIDKPHHCSHCDYKCVTSEDLKKHITRQHTIEKPYHCSHCDYKCVTSEDLKKHITRGHTIEKPYHCSHCDYKCVRSAELKRHIMYHHTFEKPHQCSHCDYKCVRSAELKSSHIMYHHTFEKPHQCSHCDYKCVRSAELKSSHIMYHHTFEKPHQCSHCDYKCVRSAELNSSHIMYRHTFEKHHQCSHCDYKGVRSTDLKRHIMYRHTIEKPHHCSHCDYKCVRSTDLKRHIMYRHTIEKPYQCSHCDYKCVRSVELKSHIMCRHTIDKPHHCSHCDYKSVTSEDLKKHITRRHTIEKIIEALKGI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -