Acus010009.1
Basic Information
- Insect
- Arma custos
- Gene Symbol
- -
- Assembly
- GCA_037127475.1
- Location
- CM073759.1:106300728-106302482[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.021 4.5 9.9 1.0 1 23 10 32 10 33 0.95 2 18 0.00086 0.19 14.3 6.4 1 23 39 62 39 62 0.96 3 18 0.0016 0.35 13.4 1.3 1 23 68 91 68 91 0.98 4 18 0.00044 0.096 15.2 0.4 1 23 97 120 97 120 0.97 5 18 0.015 3.2 10.4 1.9 2 21 127 146 126 149 0.93 6 18 0.0013 0.28 13.7 4.7 1 23 183 205 183 206 0.94 7 18 0.051 11 8.7 6.9 1 23 212 234 212 235 0.94 8 18 0.0047 1 12.0 2.2 1 23 241 264 241 264 0.95 9 18 0.0022 0.48 13.0 0.8 1 23 270 293 270 293 0.95 10 18 0.014 3.1 10.4 3.0 1 23 299 322 299 322 0.95 11 18 0.011 2.3 10.8 5.1 1 20 328 347 328 350 0.95 12 18 0.016 3.4 10.3 3.9 1 23 356 379 356 379 0.95 13 18 0.099 21 7.8 9.3 1 23 385 408 385 408 0.96 14 18 0.043 9.3 8.9 5.5 1 23 414 437 414 437 0.95 15 18 0.0062 1.3 11.6 0.9 1 23 443 465 443 466 0.95 16 18 0.0055 1.2 11.7 4.2 1 23 472 495 472 495 0.96 17 18 0.0027 0.58 12.7 0.4 1 23 501 524 501 524 0.97 18 18 0.00064 0.14 14.7 0.5 1 21 537 557 537 558 0.94
Sequence Information
- Coding Sequence
- atggcCCGCCATACTGGTGAGAGGCCTTTTGAATGTCCttattgtgactataaaactaTAACAATGGCCATTTTAAAATCACATACAATAACCCATCATACAGGCGAaaaacctcatcaatgtccacattgtCACTATAAAACTGTTAAGAGTTATAATTTAAAGTTGCATATAAGGGCCCGTCATACTGATGAAAGACCTCATCAGTGTcctcattgtgaatataaaacagCAGCAATTGGTAGTTTAAAACGTCATATTATGACCCTTCATGATGGAAAGAAACCATATCAATGTCCTTATTGTGAATACAAAACAGCAACATTTGGAAGTTTAAATTCACATGTTATGGTTCGTCACACAGGTGAGAGGCCTCAACAGTGTCCCTATTGTGAACATATAACTGTCACCCCAAGTGGTTTAGAACAACATATAATGTGCCACCATAGTGATAAACCTATTCAATGTTCAAGTTTTGAAAAGCAATCAGTAACATTCACAAGTTTTAAATCAAATTCCATGCCTAGTCATTCAAGTGAAAAACATCATCATTGTCCTTATTGTGACTATAAATCTGCTCAAATTAGCAATTTAAAGTTGCATGTAATGACCCATCATACAGGTGAGGTGCCCCATCATTGTcctcattgtgaatataaaactCCTACAATTAGAAATTTGAAATCACATATCACGGTACATCATTCTGGTGagaaacctcatcaatgtcctcactgtgaccATAAAGCAGGCTCTcctaatggtttaaaaaaacatataatggctcgtcatactgGTGAAAAACCTCATCAATGTGCttattgtgactataaaacagttgaaatcagtaatttaaaatcacatataatggctcgtcatacaggGGAGAAACCTCATCAGTGttctcattgtgactataaaacagttaaaattaatgatttaaaatcacatataatggcccgtcatacagatGAAAGGCCTCaccaatgtcctcattgtgaatataaaacagCAACAACTGGCAGTTTAAGACGTCATATGACCTGTCACACTGGAGCGAAACCTCATCAGTGTcctcattgtgaatataaagcagttcaactttgtaatttaaaatcacATATAATGGCCCGTCACACAGGTGAGAGACCTCATCATTGTCCTCATTGTGAACATAAATCAATCACACCCCGTGatttaaagaaacatataatgtcgtgtcatactggtgagaaaccacatcaatgtcctcattgtgagtatAAATCAGTTAAAAGTTGTAGCTTAAAGTCACACATAATGGCGCGCCATACTGGTGAGAAGCCTTTTGAATGTCCttattgtgactataaaactaTAACAATGACCAGTATAAAATCACATATACTAGCTCATCATACAGGTGAAAAACCTCACCAATGTcctcattgttattataaaacagttaaaatatataatttaaaatctcATATAAGGGCTCGCCATACTGACGAAAGACCTCATCAGTGCCCTCAATGTGAATATAAAACAGCAGCAATTGGTAGTTTAAAACGGCATATCATGACTCTTCATAATGAAAAACAACCTTATTATGAAGGGGAGAGGCCACATCAATGCCCTCACTGTGAATATAAAACAAGCACTCTTGATGATTTAAAAGAACATGTAATGGTTTGTTATCCTCAGAGAATATcggataataattttattggaatGAACTCTACAAACTTTAATTAcaacttttcaataaattaa
- Protein Sequence
- MARHTGERPFECPYCDYKTITMAILKSHTITHHTGEKPHQCPHCHYKTVKSYNLKLHIRARHTDERPHQCPHCEYKTAAIGSLKRHIMTLHDGKKPYQCPYCEYKTATFGSLNSHVMVRHTGERPQQCPYCEHITVTPSGLEQHIMCHHSDKPIQCSSFEKQSVTFTSFKSNSMPSHSSEKHHHCPYCDYKSAQISNLKLHVMTHHTGEVPHHCPHCEYKTPTIRNLKSHITVHHSGEKPHQCPHCDHKAGSPNGLKKHIMARHTGEKPHQCAYCDYKTVEISNLKSHIMARHTGEKPHQCSHCDYKTVKINDLKSHIMARHTDERPHQCPHCEYKTATTGSLRRHMTCHTGAKPHQCPHCEYKAVQLCNLKSHIMARHTGERPHHCPHCEHKSITPRDLKKHIMSCHTGEKPHQCPHCEYKSVKSCSLKSHIMARHTGEKPFECPYCDYKTITMTSIKSHILAHHTGEKPHQCPHCYYKTVKIYNLKSHIRARHTDERPHQCPQCEYKTAAIGSLKRHIMTLHNEKQPYYEGERPHQCPHCEYKTSTLDDLKEHVMVCYPQRISDNNFIGMNSTNFNYNFSIN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -